Template-based Modeling Results for YNJA_ECOLI

Submitted Primary Sequence

>Length 182
MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEKRS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEKRS
CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEKRS
54233224122202100110242113000001000200200100010000023232302320200000000101302000000012014321222101001212312212321200020021002122212210012003202230000000000000000000100212132204123445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLVSMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQGLCRIPEKRS
1	MUSTER	2oyoA	0.209	0.973	2.499	threading_1	LPVPDATQVPEGVRKLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVLDDHQI--ELVQVIGFNLTNRVSSALGFVPNEYYRQAR---
2	SPARKS	2oyoa	0.225	0.978	4.976	threading_2	LPVPDATQVPEGVRKLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIELVQVIG-FNLTNRVSSALGFVPNEYYRQAR---
3	PROSPECT2	3lvyA	0.145	0.945	2.580	threading_3	FTIHTIETAPERVKETLTVKKDNGGYIPNLIGLLANAPTALETYRTVGEINR--RNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNATPID-DDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVYTPENALDVVLGVSLASLCNYAN-------NADTPINPVKG
4	PPA-I	3lvyA	0.147	0.973	2.225	threading_4	FTIHTIETAPERVKETLRTVKKDNGYIPNLIGLLANAPTALETYRTVGEINRR--NSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNATPID-DDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVYTPENALDVVLGVSLASLCNYANNADTPINPELQQYVKG--
5	HHPRED-l	2prr_A	0.180	0.945	4.717	threading_5	YPVPELAALPDDIRQRILEVQDKAGFVPNVFLTLAHRPDEFRAFFAYHDAL-LKDGGLTKGERE-IVVATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVYLKA-DIPPRQRA-LDFALKVCKASHEVNEADFEALREHFTDEDAWDIAAITAFFGLSNR-ANTIG-RPND-GRVPK---
6	HHPRED-g	2gmy_A	0.219	0.802	4.058	threading_6	---------------------------KTRINYAKASPEAFKAVMALENYVQ--SSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKIATGAPDDAFETLRAHFSDEEIVKITVAIGAINTWNRIAVGFRSQHPVEA-------
7	SP3	2oyoa	0.225	0.978	5.095	threading_7	LPVPDATQVPEGVRKLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIELVQVIG-FNLTNRVSSALGFVPNEYYRQAR---
8	SAM-T99	2gmyA	0.234	0.753	5.587	threading_8	-----------------------------RINYAKASPEAFKAVMALENYV--QSSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKIATGAPDDAFETLRAHFSDEEIVKITVAIGAINTWNRIAVGFR--------------
9	MUSTER	3lvyA	0.168	0.951	2.479	threading_9	FTIHTIETAPERVKETLRTVKKDNGYIPNLIGLLANAPTALETYRTVGEINRR--NSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNATPID-DDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVYTPENALDVVLGVSLASLCNYANNA-DTPIN-----PELQQ
10	SPARKS	3lvya	0.168	0.951	4.672	threading_10	FTIHTIETAPERVKETLRTVKKNGGYIPNLIGLLANAPTALETYRTVGEINR--RNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNATPID-DDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVYTPENALDVVLGVSLASLCNYANNA-DTPIN-----PELQQ

Predicted Tertiary Structure


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TM-score=0.962 to 2oyoA SCOP code=a.152.1.3	TM-score=0.973 to 2oyoA SCOP code=a.152.1.3	TM-score=0.970 to 2oyoA SCOP code=a.152.1.3	TM-score=0.794 to 2prrK SCOP code=a.152.1.3	TM-score=0.806 to 2prrK SCOP code=a.152.1.3