Template-based Modeling Results for YNBB_ECOLI

Submitted Primary Sequence

>Length 298
MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY
5323010111000000000020011312343022001000000000000000000121000000000000002100100010011000000000000100100100000000000000000001113230112100000000000000000000000011221320000000000000000000000020023230023002222120000000000000000010112111110000000000001002001000221020321120010100000000000000000000020012
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWGIVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMIASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVFFYFIRYCCY
1	PROSPECT2	3a6pA1	0.092	0.987	1.673	threading_1	ALVKAVTVMFGLQILEHVVKFLIANGTLNILEEENHIKDALSRIVVEMIKRLSKQGETQTELVMFILLRLARRDIQQTLTQNMERIFSFLLNTLQENVNKYQESKAQANCRVGVAALNTLMSHITAENCKLLEILCLLLLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTLRSSTQMTWGALFRHEILSRDPLLLAIIPKYL----RASMTNLVKMGFPSKTDSPSCEFDSDEDFNAFFNSSRAQQGEVMRLACF
2	PPA-I	3zuxA	0.099	0.815	1.058	threading_2	HPKVVIIGVIAQFAIMPATAWCLSKLLNLP----------AEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTG-------LPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA--------------------------------------
3	HHPRED-g	2wsw_A	0.107	0.815	1.323	threading_3	QLDAIIISCWILLNAICVAFGLQK---GVKIASDVRT-----YLSFLMLGWVFIVGGASFIVNYFTDSVTLLMYMPRMLFTDPGGFPAWTVIQMSIFLARITVRELCVSGLTAGTW---LIWTILGGNTLQLIDQNILNIPQLIDGVPRAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCRSMK-EGADPPLLVRIGWSVLVGIIGIILLAL---GGLKPIQTAILFFVNIMVTL--SFIKD-AKVH--WK-----------------------------------
4	PROSPECT2	2bkuB2	0.119	0.930	1.556	threading_4	TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSDMLMGLFFRLLVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDINTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKP--------EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAA-VGLIGDIAAMFPDWVIDYIKR----------TRSGQLFSQATKDT--ARWAREQQKRQLSL
5	PROSPECT2	3kb9A	0.100	0.943	1.529	threading_5	YWPK----------LQETTRTWLL-EKRLMPADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTR-----GIVPGVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLGDEVHNLGISLITAIGEVRRRVEECITEFLAVERDALRFADELADGTVRGKELSGAVNVGNMRNWFSSVYWF
6	PROSPECT2	1ejlI	0.097	0.966	1.509	threading_6	SVEDIVKGILESQLQATQAARKLLSREKQPPIDNIIRASPIQFESAWALTNIASGTSEQTKAVVAHISEQAVWALGNIAGDGSAFRDLVIKAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLVLADSCWAISYLTDGPGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFNPKTNIQKEATWTMSNILVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE----------PLMNLLSAIQVILDAISNIFQAAEK
7	PROSPECT2	1ee4a	0.099	0.980	1.498	threading_7	QELPQMTQQLEQLSATVKFRQILSREHRPRENQPEMLQLEAAWALTNIQTKVVVDADAVPLFIQLLVKEQAIWALGNVAGDSTDYRDYVLMEPILGLFNSNKPSLIRTATWTLSNLLPTLAKLIYSMDTETLVDACWAISEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISAISNASSGGLQRPDIIRYLVNRIIEVTLDALENILKMGEADKEARGL------NINENADFIEKAGGMEKIIYEKAYKIYF
8	MUSTER	3dh4A	0.140	0.933	0.995	threading_8	VLIGGLWVANLYYWGFYIIQRTL------KSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLG-TNLPSAANADKAYPWLTQFLGVKGVVFAALAAAIVSSLASMLNSTATIFTMD-KEYISGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFW------KKT----TSKGAIIGVVASIPFALFLKFMPLSMPMDQMLYTLLFTMVVIAFTSLSTSINDDDKGISTSSMFVTDRS--FNIAAYGIMIVLAVLYTLFWVLY
9	SPARKS	2x1gf	0.082	0.977	0.987	threading_9	NQRSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGI--TSADPELSIL--VHRIVQEILHCTCSTMALAFWYM--LQDEVFAHKCWEYIKPLYAHLTRILVRK-SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN
10	PROSPECT2	3a0oA3	0.078	0.903	1.473	threading_10	AVAKDPNHCGWAEFYEKSVEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLLDASRKWLLAVDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIAL--------QGESDEAGEWLDYTV-------EFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYISTLGDLPGLKLGYNVRQFAGVTGNYFDHIKADATGTEMAFYNYGWWD--------------LNFDDLVYRHD

Predicted Tertiary Structure


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TM-score=0.494 to 1j30A SCOP code=a.25.1.1	TM-score=0.553 to 1u6gC SCOP code=a.118.1.2	TM-score=0.426 to 1j30A SCOP code=a.25.1.1	TM-score=0.478 to 2q6hA SCOP code=f.54.1.1	TM-score=0.435 to 2r2vA SCOP code=h.1.3.1