Template-based Modeling Results for YMBA_ECOLI

Submitted Primary Sequence

>Length 187
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
4110000000000010112323210010122322232222312210101202023101231000111322000022111022022102200021023213111011222222211010101102022302000101000134331121102020222432132003001100220022003214513
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
1	MUSTER	2iqiF	0.130	0.866	2.171	threading_1	----------------------ATIYAPTVRV-TPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR--IIRSDYKLAIDVRRFESDYAPAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
2	SPARKS	2iqia	0.138	0.856	2.309	threading_2	-----------------------ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
3	PROSPECT2	2iqiA	0.138	0.856	2.701	threading_3	----------------------ATIYAPTVRVTP-NPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVA----RISDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITT
4	PPA-I	2iqiF	0.136	0.866	3.435	threading_4	----------------------ATIYAPTVRV-TPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR--IIRSDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
5	HHPRED-l	2iqi_A	0.138	0.850	7.100	threading_5	----------------------ATIYAPTVRVTPNPA-WPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHSQVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT-
6	HHPRED-g	2iqi_A	0.145	0.850	7.585	threading_6	----------------------ATIYAPTVRVTPNP-AWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT-
7	SP3	2iqia	0.144	0.856	1.249	threading_7	----------------------ATIY-APTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
8	SAM-T99	2iqiF	0.133	0.845	1.633	threading_8	----------------------ATIYAPTVRVTPNPAWPQ-VSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIIRS---YKLAIDVRRFESDYAGQATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTL---
9	MUSTER	2qytA1	0.102	0.888	0.655	threading_9	IK-IAVFGVGGYYGA-----------LA-----LRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVYDERGVAEIRPIGQNTKILPLLNGADIAERR---TYLPDTVVWKGCVYISARKSAPGLADRELFYFGSGLPEQTEVRLAELLTAAIRYNPTDIDWYIKKF-
10	SPARKS	1yzfa	0.148	0.941	0.594	threading_10	MRKIVLFGDSITA-GYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRNKEVLIEKPDEVVIFDASLDRNITVATFRENLETMIHEIGSEKVILYADSGRRPERPQTRIKELVKVAQEVG--------AAHNLPVIDLYKAMT--VYPGTDEFLQASQVGYELLGALIVREIKGRP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.880 to 2iqiF SCOP code=c.51.6.2	TM-score=0.885 to 2iqiF SCOP code=c.51.6.2	TM-score=0.875 to 2iqiF SCOP code=c.51.6.2	TM-score=0.871 to 2iqiF SCOP code=c.51.6.2	TM-score=0.878 to 2iqiF SCOP code=c.51.6.2