Template-based Modeling Results for YKGA_ECOLI

Submitted Primary Sequence

>Length 239
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYDPTHVIWTQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYDPTHVIWTQA
CCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCEECCCCCCCCEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCCCEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYDPTHVIWTQA
54323322332221130021001001310422010310043010032001100121141101200111101200320332232001001303131130002001411200022124332220122122011433331202012122010000102011312330132103012210120142132201000102112432321101000011132232232010220100001000246
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRYDKELTENEMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCEYADMPKEWTTTRGLYDPTHVIWTQA
1	MUSTER	1d5yA	0.293	0.941	2.728	threading_1	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ-ISDFRHEMRYQFWHDFLGNAPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADTGHPVMLQGGEYVMFTYEGLGT
2	SPARKS	1d5ya	0.289	0.941	4.250	threading_2	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSL-EQISDFRHEMRYQFWHDFLGNAPPVLYGLNETRPSQDKDDEQEVFYTTALAQDYVLTGHPVMLQGGEYVMFTYEGLGT
3	PROSPECT2	1d5ya	0.289	0.941	3.587	threading_3	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ-ISDFRHEMRYQFWHDFLGNAPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQVLTGHPVMLQGGEYVMFTYEGLAA
4	PPA-I	1d5yA	0.292	0.946	5.164	threading_4	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLVMLQGGEYVMFTYEGLGT
5	HHPRED-l	1d5y_A	0.289	0.941	5.572	threading_5	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAGYVHPVMLQGGEYVMFTYEGLG-
6	HHPRED-g	1d5y_A	0.284	0.941	5.998	threading_6	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISREMRYQFWHDFLGN-APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDYVLTGHPVMLQGGEYVMFTYEGLGT
7	SP3	1d5ya	0.289	0.941	3.878	threading_7	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ-ISDFRHEMRYQFWHDFLGNIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDYVLTGHPVMLQGGEYVMFTYEGLGT
8	SAM-T99	1d5yA	0.279	0.946	6.119	threading_8	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWFLGNAPTIPPVLYGLNETRPSQDKDDEVFYTTALAQDQAYVLTGHPVMLQGGEYVMFTYEGLGT
9	MUSTER	1d5yA1	0.405	0.506	2.063	threading_9	-------------QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF---------------------------------------------------------------------------------------------------------
10	SPARKS	2k9sa	0.255	0.444	2.492	threading_10	-------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.849 to 1d5yA SCOP code=a.4.1.8	TM-score=0.850 to 1d5yA SCOP code=a.4.1.8	TM-score=0.845 to 1d5yA SCOP code=a.4.1.8	TM-score=0.846 to 1d5yA SCOP code=a.4.1.8	TM-score=0.837 to 1d5yA SCOP code=a.4.1.8