Template-based Modeling Results for YJGN_ECOLI

Submitted Primary Sequence

>Length 398
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL
CCHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCEEEEEEEEEEEEEEHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCEEEECHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL
54422142323121000202022001000000000000010012100010110012102021220101020010010000000000000001222122100010000000000000101112011121200100010104211101111210111110221112232122322220001000000000000000001000100100222020000202020102101200020133222211100110012001001021121322301210121143001010010000000001001001110032010221201020101020000100010001000000010001000000003111000002202123333323311000002111221324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVMPSLPFL
1	PROSPECT2	3a0oA3	0.087	0.842	1.589	threading_1	GRSARHAAAQTSHPRLWLNSEQ------LSAFADAVAKDPNHCGWAEFYEKPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRH----------LAIAGRVLGRDDLLDASRKWLLAVAAWDT-----------------------------------KGATSRAYNDEAGFRVVVALAWGYDWSVLLERTREVADHVIAHARIHVFPY--DSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYILYQRPFFQNRFPLYTKAPGTRRANFGDDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYNYGWWDDYPQVEAVSPAD--------LP--
2	PPA-I	2lkgA	0.101	0.347	1.117	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------MAHHHHHHAMVIDHILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFV---VNVIEPCKKFSELTGLVFYTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINTHHRS-------------------------------------------------------------------------------------------
3	HHPRED-g	3bvr_A	0.148	0.578	1.232	threading_3	----------ANFIAEFFGHRVEAARNDQAT--------GTCPFLTAVKAE-TSRGVTAVDNERYDWLVCPNR-ALDPLFMS---AASRKLFGYGQFIAAPTLDQAVRDGIRWLDRGVLSISKTLAEVESKRYGFHGSYKHAVGAIDI-ALVEGIDFHTRAALSKKME------GPNLSNVFKRYKFALSGHAIPQSVWKSWLRHLANPTLIGDTHLEIRVNVDTLIDLALRERAALGPSGPVATFT---DK---------------VEARMLRFWPK------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	1ee4a	0.097	0.905	1.572	threading_4	MTQQLNSDD-------------MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE-----NQPEMLQLEAAWALTNIASAQTKVVVDADAVPLFIQLLAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDKLIYSMDTETLVDACWAISYLQEAIQAVIDVRIPKRLVELLSHES-------------TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLKTKKEACWAISGGLQRPDIIRYLVSQGCIKPLCDLLRIIEVTLDALENILKMGEADKEARGLNINENADFIEQQNENDKIYEKAYKIIET-------YF
5	PPA-I	3ripA2	0.136	0.774	1.028	threading_5	ELHRLKQQPLF-SLVDFEQVVDRIRSTVAEHLWKLMVEES--DLLGQLKIIKDFY----LLGR-------------GELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKV-------LLDDDNLLPLLHLTIEYHGASGWAALGLSYKVQWPLHILF------------TPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKH--------LKSNQTDAIKWRLRNHMAF--LVDNLQYYLQVDVLESQFSQLLHTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLLDERGAAQLRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYY-----------------------------------------
6	PROSPECT2	1ejlI	0.070	0.935	1.559	threading_6	IVKGINSNN-------------LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESAWALTNIQTKAVVDGGAIPAFISLISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE--------ECGGLDKIEALQRHENEFS
7	PROSPECT2	3a6pA1	0.074	0.915	1.534	threading_7	AMTVMMDPNSTCPICVPEKTQVAIVRHFGLQILEHVVKWNGMSRLEKVYLKNSVMELIANGTLNI---LEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGV--------------AALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQEL----------QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSHYVFLKRLCQVLCALGNQLCALLGADSDV-------ETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFN
8	PROSPECT2	1q2lA2	0.085	0.862	1.526	threading_8	NPSLIKSEKKYDHPELIVDESNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGYTQRLPQLFQALLEGYFWYNQMMDSAEKGKAFEQAIMPAQMLRDERRLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVDKQPSFLWE-------------------RYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQK-----------------------------------LADFFHQAVVEPQGMASQNGKAEYVHPEGWKVWENVSALQQT-MPLMSEK
9	MUSTER	3a0oA	0.151	0.947	0.682	threading_9	SVEPWLERPVMPEPQPYPNNLWRQMYIDCQEVIYAIRHLAILLDASRKWLLAVAAWDTK-GATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHA--RIHVFPYDSHAVRSLSAVALQGESWLDYTVEFLATLYS---PWAGTDGGWAEGPHGMAYLIEAANLIRSYIPFFQNTGRFPLYTKAPGTRANFGDDSTLGDLP-GLKLGYNVRQFAGVTGNGHY--QWYFDHIKADAAFYNYGWWDLNFDDLVYRHDYPQVLPALAVFIGWATIQKHLQFVFKSSPYGSLS-GDQ----AFVLYAHGEDL-----AIQSGYYVAFNSQMHLNWRRQTRSKNAVLIGG--KGQYAEKDKALARRAAGRIVSGHVVANPLV
10	SPARKS	2xwub	0.121	0.912	0.932	threading_10	LMQAQVSPQAWHWQL-LQPDKVPEIQYFGASALHIKISWSDIPTDQYESLKAQLFTQIRFASGS--------KIVLTRLCVALASLALSMMPDAWPCAVADMVRLFDGQGRCLALLELLTVLPEEFQTSRL----PQYRKGL------VRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAA------------LQDSELFDSSVEAIVNAIQRYVNTLLKLIPLVLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLD-QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAQQVYRPVYFQLVDVLLHKAQFP--SDEEYGFWSSDEKEQSDTLMYVYE-MLGALSNL

Predicted Tertiary Structure


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TM-score=0.481 to 1c9bA SCOP code=a.74.1.2	TM-score=0.599 to 1j0nA SCOP code=a.102.3.2	TM-score=0.433 to 1sj8A SCOP code=a.215.1.1	TM-score=0.325 to 1vmdA SCOP code=c.24.1.2	TM-score=0.621 to 3ck9B SCOP code=a.118.8.6