Template-based Modeling Results for YJFF_ECOLI

Submitted Primary Sequence

>Length 331
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQQ
5433012101000000000000002021000031001001100010000000000000010100100000000000020012111100000000000000000000000110301000000000000100000003321112121121100001312111300000000000000000002303100000000110100210202141000000000000000000000010211202101000000000000000112101020000000000000021001110201110020000000000000120121123334322223232244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQQ
1	PROSPECT2	1ee4a	0.076	0.991	1.657	threading_1	ELPQMTQQLMQEQLSATVKFRQILSREHRPPIDVVIQVVPRLVEEMLQLEAAWALTNIASGTSAQTKVVVDADAVFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD---TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEANLIPPLVKLLTKKEACWAISNASSGGLQRPDIIRYIIEVTLDALENILKMGEADKEARGLNINENADFIEKA
2	HHPRED-l	2nq2_A	0.136	0.846	1.170	threading_2	----YPKILFGLTLLLVITAVISLGIGRSLSVPQVQQVIFQRLPRILTAVGAGLALIFRIIGVTSGSA--FGGTLA-IFF---GFSLYGLFTSTILFGFGTLALVFLFSFK---SLILIGMILSGLFSALVSLLQYISD--TEEKLPS--IVFWLMGSFATSNWEKLLFFFVPFLLCSSIL-LSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQ----VAISG---SIGWVGLIIPHLSRMLVGA-NH--QSLLPCTMLVGATYMLL-VDNVARDAEIPISILTALIGAPLFGVLVYKL----------------------
3	HHPRED-g	2nq2_A	0.148	0.816	1.203	threading_3	-----YPKILFGLTLLLITAVISLGIRYSLSVPQI-------QQQVIFQVRLPRIL----TALCVGAGLALSGVVLQGIFRNPLVNPHYGLFTTILFGFGTLALVFLFSF----SLLMLILIGMGLFSALVSLLQISD----TEEKL-PSIVFWLMGSFATSNKLLFFFV-PFLLCSSI--LLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVA-------ISGSIGWVGLIIPHLSRMLVGA-NH--QSLLPCTMLVGATYM-LLVDNVARDAEIPISILTALIGAPLFGVLVYK--L--------------------
4	PROSPECT2	1ejlI	0.082	0.994	1.626	threading_4	SVEDIVKGISQLQATQAARKLLSREKQPPILIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGSAFRDLVIKHGAIDPLLALYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLRIEMVVKKGVVPQLVKLLGATPALRAIGVTGTDEQTQKVIDAGALAVFEATWTMSNITAGRQDQIQQVVNHGLVPFLV--GVLSKADFKTQKEAAWAITNYTQIVYLVHCGIIEPLMNLLSAKKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC
5	HHPRED-l	2qi9_A	0.128	0.828	1.169	threading_5	QQRQNIRWLLSLSVL-LLALLLSLSAGEWISPRG-ELFVQIRLPRTLAVVGAALAILFENGLLGVSNGAGVGLIAAV-LLG-QGLPNWALGLSAIAGALIITLILLRFARR-HLSTLLAGVALGIISSAL-TWAIYFSTS---VDLRQL-YW----GGFGGVDWRQSWL-LIPVLLWISS----QSRP---LALGEISARQLGLPLWFWRNVLVAATGW-VGVS----VALAG---AIGFIGLVIPHILRLSGLT-D---HRVLLGCALAGASALLLAD-IVAAAAELPIGVVTATLGAPVFIWLLLK--------A--------------
6	PROSPECT2	1xm9A	0.100	0.934	1.463	threading_6	DEKYQAIGAYYIVQQAAAGALRNLVFR---STTNKLETRRQNGIREAVQLTGLLWNLSSTDELKIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGK----------SKKDATLELQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS---------RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMSSMLNNIINLCRSSASPKAAEAVL
7	PROSPECT2	1jdha	0.068	0.976	1.463	threading_7	KKEASRHAIMRSPQMVSAIVRTMQNTNDSHHREGLLAIFKSVLFYAITTLHNLLLLNKTNVKFLAITTDCLQILAKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLNKMMVCQVGGIEAL------VRTVLRAGDREDITEPAICALRHLTSRAEMAQNAVRLHYGLLHPPSHWPLIKATVGLI--RNLALCEQGAIPRLVQLLIVEGCTGALHILARDVHNRIVIRGAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR
8	PROSPECT2	1kpla	0.130	0.931	1.461	threading_8	TPLAILFMAAVVGTLTGLVGVAIGALVQVSGIPEIEGALEWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLLAGILFIRYNLISIKAVFTGVIMSSIVFRIFNGEAPIIEVGKLLRTQDMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGG----GFNLIPIAAAGNFS-----VGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGFPQYHLEAGTFAIAGMGALMAASIVLVLEMTDN-----YQLILPMIITCLGLYSTILARTLAKQD---------AEQ
9	MUSTER	3k3fA	0.163	0.870	0.813	threading_9	LLKN--PLIEFCDSVCRGCGQVMFQNNTVTGLLFFAGIFYNSTTLGVCAVLGTAASTL-GVDVRAG-LFGFNGTLAGIALPFFNYEMLGYVALNGAFTTIIMASLLNFLGKWGVPPFVLATWLLMFGVYLSLFHPGALIAPALPS-------------MGTVTGRTFMEGLFKGVGEVMF------------QDNIVTGVIFAILVNS---RISALFAVIGSLVGLCTALIMHSPETPLGLYGFNSVLCGIAMGGIFFYLNI-ALGCMVLGAIATGAFSVLLSPIGMPALTWPFIVVTWLFLFAG----------RNIAQVPTEKAGTPED
10	SPARKS	1ee4a	0.083	0.909	0.772	threading_10	IASGTSAQTKVVVAVPLFIQLLYTGSVEVKEIWALGNVAGTDYRDYVLQCN-AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA---------LPTLAKLIYSMDACWAISYLSDQEAIQAVIDVRIPLLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK----KEACWTISTAGNTEQIQAVIDANLIPPLVKLLEV-----AEDKT-KKEACWAISNASSGGLQ----RPDIIRYLVSQ---GCIKPLCDLLEIAD---NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA

Predicted Tertiary Structure


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TM-score=0.407 to 2db7A SCOP code=a.273.1.1	TM-score=0.787 to 1ialA SCOP code=a.118.1.1	TM-score=0.736 to 1l7vA SCOP code=f.22.1.1	TM-score=0.736 to 1l7vA SCOP code=f.22.1.1	TM-score=0.768 to 1l7vA SCOP code=f.22.1.1