Template-based Modeling Results for YJDF_ECOLI

Submitted Primary Sequence

>Length 209
MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG
55431221110000000000000000103121100010000000000000003312112000000000000000000001120000100120010221111100000100000000100002112222220000000000000000010010000101121012010121001101000001000000000000200021033123234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTRTLKPLILNTSALTLTLILIYTGISAHDKLTWLMEVTPVIIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG
1	PROSPECT2	1pw4A2	0.100	0.909	1.163	threading_1	TAKQINKLLWYIAIANVFVYLLRYGIFALDKSSWAYFLYEYAGIPGTLLCGWDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM-----------IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY--------TVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP
2	PPA-I	1pw4A2	0.114	0.880	1.024	threading_2	----------TAKQIFMQYVL-------PNKLLWYIAIANVFVYLLRYGILDWSKEVKHFALDKSSWAYFLYEYAGIPGTL---LCGWMSDKVFRGN-----RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ
3	PROSPECT2	1oyzA	0.078	0.976	1.158	threading_3	YRKASKEYGLYNQCKKLNDDELFRLLDDHNSLISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNALNDKSACVRATAIESTAQRCIVEQSQITAFDKSTNVRRATAFAISVNGDVRNWAAFAININKYDNSDIRFVELQDKNEEVRIEAIIGLLSVLCDELAAGELGDKTLLPVKLKRS
4	PROSPECT2	3a0oA3	0.110	1.000	1.132	threading_4	GRSARHAAHCGWAEFYEKSVEPWLERPVMPWRQMYIDCQEVIYAIRHLAIAGRGATSRAYNDEAGFRVVVALAWGYDWLYDHLSVRSVLLERTHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATGMAYLIEAANLIRSYIGYDLYQRFPSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEM
5	PROSPECT2	2bkuB2	0.081	1.000	1.127	threading_5	LTLEDAQSLQELQSNILLMGLFFRLLEKKDSAFIEDDVFYAISALAYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALAQVAEDPQLYSEDATSRAAVGLIGDIAAMQDWVIDYIKRTRSGQL
6	PROSPECT2	1r2fA	0.090	0.962	1.095	threading_6	ISSAAEQQLTIRVFTGLTLLDTIMADAITPHEEAVLSNISFMEAVRSYSSIFSTLCQTKEVDAAYAWSEENPPLQ--------RKAQIILAHYVSDEPLKKKIASVFLEYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALDVKAFLCYNANKALMNLGYESP
7	MUSTER	1pw4A2	0.102	0.895	0.782	threading_7	-----TAKQIFMQYVLPNKLLWYIA-----IANVFVYLLRYGILDWSPTYLKEVKHFA---LDKSSWAYFLYEYAGIPGTL---LCGWMSDKVFRGN----RGATGVFFMTLVTIATIVYW--NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKTAAGFTGAASDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ
8	SPARKS	2z6ea	0.139	0.967	0.853	threading_8	FKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNISSLNIADTKSSIDKNITLLHYLITIVEN-----KYPSVNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPFVSVVSQFITVASFSFSDVEDLLAEAKDTKAVKHFGEEAG--KIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEE
9	PROSPECT2	3kb9A	0.096	1.000	1.094	threading_9	AKRLMPADKVEEYADGLCYTDLMAGYYLGEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEHWIWTDLLEPSSPAYRRAALLSQEFAVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVERDLRFADELADGTN
10	PPA-I	3mvpA	0.090	0.847	0.946	threading_10	PKQERSIEKRNKILQVAKDLFSDKTYFNVSKEDILTALLKRYNDFFLTTIFADINSQDSLDRFKKNPKEWLNVLINQLLAAEDKIFHAQIELAYAIP-QAKALLEEHNNNLKNLTYKCLLYYSDQAANPSFKTLSLVVFDFISALVDELLYHEHTQEEAHQIKKT------GIDSLDLIIKSYL-------------------------

Predicted Tertiary Structure


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TM-score=0.851 to 1pw4A SCOP code=f.38.1.1	TM-score=0.770 to 1pw4A SCOP code=f.38.1.1	TM-score=0.746 to 1oyzA SCOP code=a.118.1.16	TM-score=0.536 to 1wzzA SCOP code=a.102.1.2	TM-score=0.727 to 3ea5B SCOP code=a.118.1.1