Template-based Modeling Results for YHJV_ECOLI

Submitted Primary Sequence

>Length 423
MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLKLIE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLKLIE
CCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLKLIE
554332243333131121010000100000010000101121124001000000010000010001000100152321431130012101320010000000011020010001000110120022101131311100001000000000001111200010010000010000000000102202010022123022001100000000000010020010001202432233220120022002000000000000000001011113201201422020000013112020020000000000000000010000120021001200232232441323101000000000000001111110010130001000000000000001202202413111000000000000001013113
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKVAQLEKLRGFKAWLILLYGILLCLSPLLKLIE
1	MUSTER	3gi9C	0.167	0.922	1.317	threading_1	ME-----LKNKKLSL----WEAVSMAVGVMIGASIFSIFVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPL-----IAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNAS-------EHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE---NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD-LPEFFE--RKVWFKSTEGLYITSALGVLFALLFNMEVASITSAVFMVIYLFVILSHYILIDEVGG----RKEIVIFSFIVVLGVFLLLLYYQWI
2	SPARKS	3gi8c	0.159	0.920	1.873	threading_2	ME-----LKNKKLSL----WEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMS---YVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPDLAPSA-VSGMIFASAIFFLSYMGFGVITNASEHIEN-------PKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE---NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKEFFERKVWFKSTELFNMEGVASITSAVFMVIYLFV---ILSHYILSFIVVLGVFLLLLYYQWIT--------NRFVFYGIIATFIGVLIFEIIYRK
3	PROSPECT2	1jdha	0.085	1.000	1.932	threading_3	NLIRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRSGGIPALVKMLGSPVDSVITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILARVLKVLSVCSSNKPAIVEAGGMQALGRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLNVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLPANHAPLRGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHINRIVIRGLNPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEGATAPLTELLHVATYAAAVLFRMS
4	PPA-I	3gi9C	0.158	0.913	2.456	threading_4	-----MELKNKKLSL----WEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDN------IITGALSILLWMSYVISIALFAKGFAGYFLPLIAPINNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLA-PSAVSGMIFASAIFFLSYMGFGVITNAS-------EHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE---NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDFFERKVWFKSTEGLYITSALGVLFALLF--------NMEGVASITVFMVIYLFVILSHYILIDEVGGRKE---IVIFSFIVVLGVFLLLLYYQWI
5	HHPRED-l	3gia_A	0.166	0.910	4.405	threading_5	-------LKNKKLS--LWE--AVSMAVGVMIGASIFSIFVIAGRNLPETFILSGIYAL----LVAYSYTKLGAKIVSNAGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPLIN--AP-INTFNIAI-TEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDL-APSAVSGMIFASAIFFLSYMGFGVITNASEHIE----N---PKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKAS---ENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGLPEFFER--KVWFKSTEGLYITSALGVLFALLFNMEGVSITSAVF----MVIYLFVILSHYILID-EVGGRKIVIFSFIVVLGVFLLLLYYQW-
6	HHPRED-g	3gia_A	0.162	0.917	4.980	threading_6	--LK-----NKKL--SLWEA--VSMAVGVMIGASIFSIFGIAGRNLPETFILSGIYALLVAY----SYTKLGAKIVSNAGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPLI-N-API-NTFNIAIT-EIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDL-APSAVSGMIFASAIFFLSYMGFGVITNASEHI----EN---PKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE---NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP-EFFERKVWFKSTEGLYITSALGVLFALLFNMEG--VASITS-AVFMVIYLFVILSHYILID-EVGGREIVIFSFIVVLGVFLLLLYYQWI
7	SP3	3ob6a	0.133	0.908	1.801	threading_7	-------ADAHKVGL----IPVTLMVSGNIMGSGVFLLPANL-ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPIL----KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAVSGLGTFGAIQSTLNVTLWSFESASVAAGVVKNPKR-------------NVPIATIGGVLIAAVCYVLSTTGMIPNAALRVSA----SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADPIFARVNKAGTP----VAGLIIVGILMTIFQLSSISPGVSSVSVIFTPYLYTCAALLLLG--HGHFGKRPAYLAAKEVMWSFVTLMVITAMYALNY
8	SAM-T99	1clbA	0.205	0.092	0.542	threading_8	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKG-----------------------------------------------------------------
9	MUSTER	3l1lA	0.149	0.891	1.224	threading_9	---------AHKVGL----IPVTLMVSGAIMGSGVFLLP--ASTGG--IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA---------AIQSTLNVTLWSFIGVESASVAA-------GVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRV---SA-SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDLFPPIF--ARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFG-SSVSVIFTLVPYLYTC--AALLLLGGKARPAYLAVTTIAFLYCIWAVVG
10	SPARKS	3ob6a	0.141	0.908	1.865	threading_10	-------ADAHKVGL----IPVTLMVSGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPIL----KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIM-------GMIPNAALRVSA----SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADPIFARVNKAGTP----VAGLIIVGILMTIFQLSSISPGVSSVSVIFTPYLYTCAALLLLG--------HGHFGKARPAYLAVTTIAFLYCIWAVVG

Predicted Tertiary Structure


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TM-score=0.706 to 2q6hA SCOP code=f.54.1.1	TM-score=0.699 to 2q6hA SCOP code=f.54.1.1	TM-score=0.685 to 2q6hA SCOP code=f.54.1.1	TM-score=0.593 to 1ialA SCOP code=a.118.1.1	TM-score=0.689 to 2q6hA SCOP code=f.54.1.1