Template-based Modeling Results for YHJD_ECOLI

Submitted Primary Sequence

>Length 337
MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP
5533332342233233322332332342231220130011002203400000000100220133102100000111122111211110110002112222200330122024302322111002200220023211100000000001001000001200101022114323334320112102200110010001001101110001002100200303213102000200010000001000001002201334032210010000000002002100110011014111000100000000000000100000000102133433242224338
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTQENEIKRPIQDLEHEPIKPLDNSEKGSKVSQALETVTTTAEKVQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALHLNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQP
1	PROSPECT2	3a0oA3	0.114	0.887	1.617	threading_1	GRSARHAAAQTSHPRLWLNS---------------EQLSAFADAVAKDPNHCGWAEFYEKSPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVL--GRDDLLDASRKWLLAVAAWDTKGATSRAYNDEAG----FRVVVALAWGYDWLYDVRSVLLERTREVADHVIAHARIHVFPY-----DSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVLYSPWAWMTGMAYLIEAANLIRSYINTGRFPLYTKTLGDLPGLKLGYNVRQFAGVTGHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHD------------YPQVEAVSPADLP
2	PPA-I	1t33A	0.119	0.650	1.365	threading_2	------------------------MNIPTTTTKGEQAKSQLIAAALAQ-FGEYGLHATRDIAALAGQNIAAITYYFG--------------------SKEDLYLACAQWIADF-----LGEKFRPHAEKAERLFSQ------------PAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDAND-TRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGLTQ-------------------------------------------------------
3	PROSPECT2	1ee4a	0.063	0.991	1.531	threading_3	ILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEASAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQPILGLFNSNKPSLIRTATWNLCRGKKPQPDWSVVSQALPTLAKLIYSTLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES---TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLADNRIIEVTLDALENILKMGEADKEARGLNINENAQQNEND
4	PPA-I	3kb9A	0.086	0.893	1.183	threading_4	--------AVPPSLRLPVIEAAFPRQLHPYWPKLQETTRTWLLEKRLMP----ADKVEEYADGLC---YTDLMAGYYLGAPDEVLQAIADYSAW-----FFVWDDRHDRDIVH-GRAGAWRRLRGLLHTALDSPGDHTLVAGFADSVRRLRFARHFHTVIEAYDREFHNRTRGIVPG---------------VEEYLELRRLTFAHWIWTDLLEPSSGCEKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLEAIGEVRRRVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESGRYMVDSWDDRSTP
5	PROSPECT2	1ejlI	0.079	0.944	1.503	threading_5	GTVNWSVE------------DIVKGINSNNLESQLQATQAARKLLSREKQ-----PPIDNIIRAGL--IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDAFISLLASPHAHISEQAVWSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVVLADSCWAISYMVVKKGVVPQLVKLLGATELPIVTPALRAIGNQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYQVILDAISNIFQAAEKLGETEKEALQRHENE
6	PPA-I	3zuxA	0.128	0.721	1.103	threading_6	------------------------------------------------------------------NILSKISSFIG--KTFSLWAALFAAAAFFAPDTPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV---IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLAR------GNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSK---TEKLTDALPLVSVAAIVLIIGAVVGASKGK---IMESGLLIFAVVVLHNGIGYLLGFFAAKWT-----------GLPYD
7	PROSPECT2	1jqca	0.096	0.926	1.493	threading_7	AYTTFSQTKNDQLFGQPVNVARYDQQKYDIFEKLIEKQSRDRIDYQALP--EHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGIS-----------SYYDELIEMTSYWHLL--GEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEQECYDLFVQAAQQEKD-WADYLFRDGSMIGLNKDILCQYVEYITNIRMQ---------AVGLDLPFQTRSNP
8	PPA-I	3i9wA	0.100	0.801	1.080	threading_8	--------------------------------PTMNMARQLSEASAWELFAAQNLTSADNEKMWQ--AQGRMLTAQ-----SLKINALLQALRE-QGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQ---AAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQ-----KNAPTLEKQLNNAVKILQRRQIRI--EDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQN--NIAQFAQFSSEVSQLVDTIELRNQ---------------
9	PROSPECT2	3kb9A	0.061	0.929	1.491	threading_9	--------AVPPSLRLPVIEAAFPRQLHPYWPKLQETTRTWLLEKRLMPVEEYADGLYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTR--------GIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVR--------KHPAYRRAALLSQEFAAWYNDLCSLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVERDALFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESDSWDDRSTPPYVNN
10	PPA-I	3g61A4	0.105	0.709	1.069	threading_10	-----------------------------------------------------------------GWKLTLVILAI-----SPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSLDEDVPPASFWRILKLNSTEVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPP------ETQRQNSNLFSLLFLILGIISF-------ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVKGATGSRLAVIFQNIANLGTGIIISLIY---------------FE

Predicted Tertiary Structure


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TM-score=0.632 to 1j0nA SCOP code=a.102.3.2	TM-score=0.581 to 1j0nA SCOP code=a.102.3.2	TM-score=0.805 to 1t33A SCOP code=a.4.1.9	TM-score=0.845 to 1hm7B SCOP code=a.128.1.4	TM-score=0.807 to 1ialA SCOP code=a.118.1.1