Template-based Modeling Results for YHDX_ECOLI

Submitted Primary Sequence

>Length 393
MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
553432223222011112010000100000000000010011002002311120001001210101012100213311200100010000000000000000000000000021031100220000001002201000100000000021020222000000000001200110011102000000000000000000001002112232110210010001001101100000000001110010211114111110130000000000000000010020003101210110031111110100010000100210011001200100110000000001100110001012210200000000000000000000100201132122244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
1	MUSTER	3dhwA	0.199	0.499	1.286	threading_1	--------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT--------------------------------------------------------------------------------------------------------SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI-GYNATVMNTVLVLLVILVYLIQFAGD------------
2	PROSPECT2	1ejlI	0.101	0.936	1.893	threading_2	GTVNWSVEDIVKGINSNNLESQLQATQ---------------AARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL-------VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG---VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGANPKTNIQKEATWTMTAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGITKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGS
3	SP3	2onkc	0.131	0.641	1.635	threading_3	------------------MR-LLFSALLALLSSIILLFVL----LPVAATVTLQLFNF----DEF---LKAASD-------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS-------------FPGKSVVEGIVDLPVV--------------------------------------------------------------------------------IPHTVAGIALLVVFGSS---GLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSEG-LSAAMPVAAILILLSLAVFVALRIIVG-------
4	SPARKS	3dhwa	0.169	0.496	4.856	threading_4	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI-----------VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGG-LGQIGYQYGYIGYNA-TVMNTVLVLLVILVYLIQFAGD-----------
5	PROSPECT2	3dhwA	0.204	0.499	2.240	threading_5	M--------------------------------------------------------------------------------WLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT--------------------------------------------------------------------------------------------------------SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQI-GYQYGYIGYNATVMNTVLVLLVILVYLIQFA------------GD
6	PPA-I	3dhwA	0.164	0.496	2.891	threading_6	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI-----------VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI-GYNATVMNTVLVLLVILVYLIQFAGD------------
7	PROSPECT2	3a6pA1	0.099	0.924	1.852	threading_7	MMDPNSTQRYGLRLAEKTQVAIVRHFGLQILEHVVKVYLKNSVMELIANGTLNIL--------------------EEENHIKDALSRIVVEMIKETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN------EQELQLGAAECLLIAVSRKGPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYAFTTHPSQFLRSSTQMDPLLLAIIPKYLRASMTNLVSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE--VMRLACRLDPKTSFQMAGEWLKYQLS--TF
8	HHPRED-l	3tui_A	0.201	0.532	4.118	threading_8	---------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV------------------------------------------------------------------------------------------------GTS------I--GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ-IGYQ-YGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR---
9	HHPRED-l	3rlf_F	0.137	0.725	3.767	threading_9	LSDGEDAFKTAPEGERANLRVITQQALSDLPDGNGTLYTLDGDLTN-NQSGVQIG--FYI----EKLSPGYTVTTGWKNFTRVFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSAL-------FGVKPAW-------------------------------------------------------------------------F---S----DPARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTGPDLLVNYTRIAFEGGGQDFGLAAAIATLIFLLVGALAI--------------
10	HHPRED-g	3tui_A	0.206	0.532	4.508	threading_10	-------------------------------------------------------------------------MSEP--MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLIIANAKLYRTVSAIVNIFRSIPFIILLVWM-----------------------------------------------------------------------------------IPFTRV-IVGT------------S--------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQI-G-YQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR---

Predicted Tertiary Structure


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TM-score=0.672 to 3dhwA SCOP code=f.58.1.1	TM-score=0.438 to 1h6gA SCOP code=a.24.9.1	TM-score=0.714 to 3dhwA SCOP code=f.58.1.1	TM-score=0.858 to 1ialA SCOP code=a.118.1.1	TM-score=0.680 to 2onkC SCOP code=f.58.1.1