Template-based Modeling Results for YGJI_ECOLI

Submitted Primary Sequence

>Length 477
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
CCCCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEEEHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
554344220000000000000011021102110210010000000000011011000001011124324100000023011120000000000000000000000100000000010222111210000000000000000102103101201100100110100000000011110112112101031011301110000000000000001000100321321242113000000000000100000001000113103211000100200021000121000100000000000000000000001000231331000320131143200110000000000000001100131022002000100000000000000000010113233132302002320000000000000000000000111231111000100000000000001013123212233322322323434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
1	MUSTER	3l1lA	0.169	0.878	2.999	threading_1	-----AHKVGLIPVTLMVSGAIMGSGVFLANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGE--------------TYMAAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS--SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLA---TTIAFLYCIWAVVGSGAKE--------------VMWSFVTLMVITAMYALNYN-------RLHKNPYPL---D
2	SPARKS	3ob6a	0.161	0.897	6.360	threading_2	---ADAHKVGLIPVTLMVSGNIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPIL---KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGL---GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR-----MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--------SSISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLA-----------VTTIAFLYCIWAVVGSGA-------KEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA-------
3	PROSPECT2	3gi8C	0.104	0.904	2.584	threading_3	MELKNKK-LSLWEAVSMAVGVMISIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSN-AGPIAFIHKAIGDNIITGALS--ILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPDLAPSAV------SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASELAVAAKPFLG------NLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLFN---------MEGVASITSAVFMVIYLFVILSHYILIDEVGG-RKEIVIF---------SFIVVLGVFLLLLYYQWITN----RFVFYGIIATFIGVLIFEIIYRKVTKRTFSN------NMYVKS
4	PPA-I	3l1lA	0.171	0.883	7.636	threading_4	-----AHKVGLIPVTLMVSGAISGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA--------------AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS--SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAY--------LAVTTIAFLYCIWAVVGSGA----------KEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA-------
5	HHPRED-l	3l1l_A	0.150	0.881	8.818	threading_5	------HKVGLIPVTLMVSGAIMGSGVFPANLASTGGIAIYGWLVTIIG-ALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP---ILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGE----TYM--AA--------IQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGD-----AARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSS-IS-PNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--GKARPA--YLAVTTIAFLYCIWAVVGS---------GA---KEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA---------
6	HHPRED-g	3l1l_A	0.152	0.881	7.862	threading_6	-----AHKVGLIPVTLMVSGAIMGSGVFLLPAASTGGIAIYGWLVTIIG-ALGLSMVYAKMSFLDPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI---LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYM---AA-----------IQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR--M---ALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--GKARPAYLAVTTIAFLYCIWA---------VVGSG-----AKEVMWSFVTL--MVITAMYALNYNRLKNPYPLDA--------
7	SP3	3ob6a	0.167	0.893	5.975	threading_7	---ADAHKVGLIPVTLMVSGNIMGF--LLPANASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGAIAMVVIGVGYLSYFFPIL---KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNV--SGLGTF-GAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR-----MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLS--------SISPGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYL-----------AVTTIAFLYCIWAVVGSG-------AKEVMWSFVTLMVITAMYALNYNRL-----HKNPYPLDA--
8	SAM-T99	3l1lA	0.160	0.878	8.459	threading_8	-----AHKVGLIPVTLMVSGAIMGSGLLPANLASTGGIAIYGWLVTI-IGALGLSMVYAKMSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP---ILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYM--------------AAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFDAARMAL------GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI--SPNATKEFGLVSSVSVIFTLVPYLYTCAALLLL--------------GHGFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA------------
9	MUSTER	3gi9C	0.124	0.897	2.772	threading_9	ME-LKNKKLSLWEAVSMAVGVMIGASIFSVGAKIAGRNLPETFILSGIYALL-VAYSYTKLGAKIVSN-AGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPLIAP----INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI----------HPSYVIPDLASGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASEN--ALAVAAKPF--LGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLF----------MEGVASITSAVFMVIYLFVILSHYILIDEVG-GRKEI------VIFSFIVVLGVFLLLLYYQWITNRF------VFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKSLES----
10	SPARKS	3l1la	0.169	0.883	6.159	threading_10	-----AHKVGLIPVTLMVSGAIMGVFLLPANLASTGGIAIYGWLVTIIGALG-LSMVYAKMSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF---PILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGE--------------TYMAAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASP---FGDAARMA--LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQL--SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLA--VTTIAFLYCIWAVVGSGAKE--------------VMWSFVTLMVITAMYALN-------YNRLHKNPYPLDA--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.668 to 2q6hA SCOP code=f.54.1.1	TM-score=0.668 to 2q6hA SCOP code=f.54.1.1	TM-score=0.690 to 2q6hA SCOP code=f.54.1.1	TM-score=0.706 to 2q6hA SCOP code=f.54.1.1	TM-score=0.677 to 2q6hA SCOP code=f.54.1.1