Template-based Modeling Results for YGFF_ECOLI

Submitted Primary Sequence

>Length 247
MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFIDLAGGK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFIDLAGGK
CEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFIDLAGGK
2110000001200010001100321010000013223102200210251102000010101233102200220043132000000000011231103202232023001000100010012003200422122100000000001211111200000001000110010001100321010000000002031122122221023033201132012031002000000023011010100112234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFIDLAGGK
1	MUSTER	1geeA	0.362	0.984	2.255	threading_1	MKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI--KGTVINMSSVHEKIPWPLF-VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM
2	SPARKS	3i3oa	0.357	0.976	2.070	threading_2	GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHL-----KQGDVIINTASIVAYEGNET-LIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGV
3	PROSPECT2	1gcoa	0.362	0.984	3.382	threading_3	MKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN--DIKGTVINMSSVHEKIPWPLF-VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGG
4	PPA-I	1geeA	0.358	0.984	1.818	threading_4	GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPV-SSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI--KGTVINMSSVHEKIPWPLF-VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFDPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM
5	HHPRED-l	3ak4_A	0.336	0.964	1.489	threading_5	GRKAIVTGGSKGIGAAIARALDKAGATVAIADLD-VMAAQAVVA---GLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTM-RPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASN--TKGVIVNTASLAAKVGAPL-LAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQERETPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG-
6	HHPRED-g	3ak4_A	0.345	0.964	1.295	threading_6	GRKAIVTGGSKGIGAAIARALDKAGATVAIADL-DVMAAQAVVAGLEN---GGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTM-RPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNT--KGVIVNTASLAAKVGAPLL-AHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREPEAVR-AEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGV
7	SP3	3r3sa	0.365	0.976	2.024	threading_7	DRKALVTGGDSGIGRAAAIAYAREGADVAINYLAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLL-----PKGASIITTSSIQAYQPSPH-LLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE
8	SAM-T99	2uvdA	0.349	0.976	1.588	threading_8	GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNL-LMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ---RHGRIVNIASVVGVTGNPGQ-ANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVL-DENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGM
9	MUSTER	3afmA	0.272	0.996	2.239	threading_9	MKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK-TQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHLSGYITGQVLDINGGQ
10	SPARKS	3r3sa	0.365	0.976	2.069	threading_10	DRKALVTGGDSGIGRAAAIAYAREGADVAINYLAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLL-----PKGASIITTSSIQAYQPSPH-LLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.955 to 1geeA SCOP code=c.2.1.2	TM-score=0.929 to 1edoA SCOP code=c.2.1.2	TM-score=0.931 to 1edoA SCOP code=c.2.1.2	TM-score=0.952 to 1geeA SCOP code=c.2.1.2	TM-score=0.955 to 1geeA SCOP code=c.2.1.2