Template-based Modeling Results for YGER_ECOLI

Submitted Primary Sequence

>Length 251
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEHHHCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEECCEECCHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC
54222112200000000000000000112322321222110020241110120032111203100411212222102113323112232222233222322232222222212232222211221100102020001112232003000000121110000020100000122310000000201210000000011010231220211120010012412102000101132211101310133224342
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC
1	MUSTER	2hsiB	0.223	0.876	2.246	threading_1	---SFIMRLLNKPVPGGVAVVDL---GEEGPPPRAFYQGKPVLVVREE---------GRRWIAVVGI-----PLSTKPGQKLEVRAATGNHEERFSVGSKLPEDELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPF----GPHSGLDFAVPAGTPIKAPAAGKVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGATGPHMHWNVSLNDARVDPAIFIGAF------
2	SPARKS	2gu1a	0.279	0.813	3.201	threading_2	--------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHMIQPGEELELMMDDMGQLSRSFKLAKGDVSAFLAEDGRFYDRAGNSLERAFNRYPVYRQITSGFNGRVVPHNGTDFATPIGAPVYSTGDGKVIVVRK-HPYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGLTGPHLHFEVLVRNRPVDAMKDLP--------
3	PROSPECT2	2gu1A	0.215	0.964	3.195	threading_3	VPYSILQKILSVDLDHLQLDMIQPGEDDMGQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKQQYLGEHNTGNSEIKAISFKLAKGDVSAFLAEDGRFYDRAGNSLERAFNRYPVDKAYRQITSGFNPKRVPHNGTDFATPIGAPVYSTGDGKVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGLTGPHLHFEVLVRNRPVDAMKDLP--------
4	PPA-I	1qwyA2	0.285	0.657	2.918	threading_4	------------------------------------------------------------------------------GQTVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSSGHAKDASWLTSRKQLQPYYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGSTAPHVHFQRMSGGIAVDPTSYLQ--------
5	HHPRED-l	2gu1_A	0.270	0.813	6.425	threading_5	--------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSHLQLDMIQPGEELELMMDDMGQLSENDESSIDFSRRAKQQAISFYDRAGNSLERAFNRYPVDKQITSGFNPKRVPHNGTDFATPIGAPVYSTGDGKVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRTGPHLHFEVLVRNRPVDAMKALP--------
6	HHPRED-g	2gu1_A	0.279	0.813	5.761	threading_6	--------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLLDMIQPGEELELMMDDMGQLSSGEGLTKIDSRASFKLAKGAEDRAGNSLERAFNRYPVDKQITSGFNPKVVPHNGTDFATPIGAPVYSTGDGKVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRTGPHLHFEVLVRNRPVDAMKALP--------
7	SP3	2hsia	0.181	0.900	3.313	threading_7	------------SFIMRLLNKPVPG--GVAVVDLGEEGPPPRAFYQGKPVLVVREEGRRWIAVVGIPLSTKPGPQKLEVRAATGNHEERFSVGSKPEDLKRIERELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPF-----PHSGLDFAVPAGTPIKAPAAGKVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGATGPHMHWNVSLNDARVDPAIFIGAFQ-----
8	SAM-T99	2gu1A	0.333	0.741	4.174	threading_8	--------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDDMIQPGEELELMDRAGNSLERAFNRYPVDKAYRQITSGFNPKRKHPVTG------------------RVVPHNGTDFATPIGAPVYSTGDGKVIVVRK-HPYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGLTGPHLHFEVLVRNRPVDAMKALP--------
9	MUSTER	1qwyA	0.254	0.817	2.168	threading_9	-----------------------------------VSYGTYYTIDSGD--YHHTPDGNWN-QAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATYQSNVGPDASYYSSGHAKDASWLTSRKQLQPYYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGSTAPHVHFQRMSGGYAVDPTSYLQ--------
10	SPARKS	2hsia	0.184	0.888	3.155	threading_10	-----------------SFIMRLLNKPVPGGVDLGEEGPPPRAFYQGKPVLVVREEGRRWIAVVGIPLSTKPGPQKLEVRAATGNHEERFSVGSKPEDLKRIERELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPF-----PHSGLDFAVPAGTPIKAPAAGKVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGATGPHMHWNVSLNDARVDPAIFIGAFQ-----

Predicted Tertiary Structure


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TM-score=0.565 to 1qwyA SCOP code=b.84.3.2	TM-score=0.582 to 1qwyA SCOP code=b.84.3.2	TM-score=0.582 to 1qwyA SCOP code=b.84.3.2	TM-score=0.586 to 1qwyA SCOP code=b.84.3.2	TM-score=0.762 to 1qwyA SCOP code=b.84.3.2