Template-based Modeling Results for YGCS_ECOLI

Submitted Primary Sequence

>Length 445
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
5330211122020111000000000000001000000000001200320302211000000000000000000001001211211000000000000000000021010000000000000000000000000100133111100000000000000000000000013222011000000000000000001102300200152222220120023013332222331132223303200224112100000000001000000000000100220103210000000000100000000000111112200000000000000000001111000000000000000000000000002002120101000000000100000000000100220001000000000000000000010231321112101201223343234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
1	MUSTER	1pw4A	0.137	0.921	2.030	threading_1	LPAAEI---DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-AWFNDWHAALYMPAFCAILVALFAFAMRDTPQ------------------CGLPPIEEYKNDTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFAKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWMNPAGPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-GWDGGFMVMIGGSILAVILLIVVMIG----EKRRHEQLLQELVP----
2	SPARKS	1pw4a	0.128	0.933	4.214	threading_2	KARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMRDTP-----------------QSCGLPPIEEYKNDTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFAKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV----MIGEKRRHEQLLQELVP----
3	PROSPECT2	1pw4A	0.118	0.933	3.339	threading_3	FKPAPHKARLPAAERLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAIVALFAFAMMRDTP--------------------QSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV--------MIGEKRRHEQLLQELVP
4	PPA-I	1pw4A	0.139	0.921	3.154	threading_4	LPAAEIDPT---YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMNDWHAALYMPAFCAILVALFAFAMMRDTPQS--------------------CGLPPIEEYKNDTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFAKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWMNPAGPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFGWDGGFMVMIGGSILAVILLIVVM-------IGEKRRHEQLLQELVP-
5	HHPRED-l	1pw4_A	0.116	0.933	6.138	threading_5	KALPAAEIDP-TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-----------------TAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFALSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP--------
6	HHPRED-g	3o7q_A	0.172	0.852	5.094	threading_6	--------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNPLSVQTPYMIIVAIVLLVALLIMKFPALQSD---NHS---------------DA----KQGSFSASLSRLARIRHWRWVLAQFCYVGAQ----TACWSYLIRYAVEEGMTAAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGL-IALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAGNIPTAELIPALCFAVIFIFARFR-SQT---------------------
7	SP3	1pw4a	0.128	0.933	3.967	threading_7	KARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-AWFNDWHAALYMPAFCAILVALFAFAMRDTPQ-----------------SCGLPPIEEYKNDTAKQIFMQYVLP---NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFAKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM--IG--EKRRHEQLLQELVP----
8	SAM-T99	1pw4A	0.126	0.854	2.345	threading_8	FKP---RLPAAEIDPTYRRLRWQIFLGIF--------FGYAAYYLVRKNFASRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAM---------------------------MRDTPPIEEYKNDTAKQIFMQYVLPNLWYIAIANVFVYLLRYGILDWSPTYLKEKHFAKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV--------------------------
9	MUSTER	3o7pA	0.170	0.885	1.626	threading_9	--------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV---PYMIIV---IVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLAIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEGMTFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMT--IGGGIVTPVMGFVSDAAGIPTAELIPALCFAVIFIFARF-----RSQT-----------------
10	SPARKS	2gfpa	0.146	0.834	3.494	threading_10	-------------------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL--IGGLLDTMWNWRACYLFLLVLCAGVTFSMAR------------------------WMPETRPVDAPRTRLLTSYKTLFGSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLS-SMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLIPDWFGVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL--------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.887 to 1pw4A SCOP code=f.38.1.1	TM-score=0.899 to 1pw4A SCOP code=f.38.1.1	TM-score=0.899 to 1pw4A SCOP code=f.38.1.1	TM-score=0.915 to 1pw4A SCOP code=f.38.1.1	TM-score=0.897 to 1pw4A SCOP code=f.38.1.1