Template-based Modeling Results for YGCE_ECOLI

Submitted Primary Sequence

>Length 492
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
CCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCEEEEECCCCCEECHHEEECCCCHHHHHHHHCCCCCHHCCCCHHHHHHHCCCCCCCHHHHHCCCCEECCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
554200000011010000000124020001020222312112230021012100200020022003313033310100000122100000213211001000011120230023123310221111000002001301210011111000003212112110002203022310040221110002012200321312220100000002002000000123220100000000000004222333201000000022200010000110010010013100310021033331113202323010000002100000110122111111000000112020210010011000000220021004304220210001110030200000001004020210222101000000000000011310220032003121202123200320220030003101310230033012002210110221232255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
1	MUSTER	2zf5O	0.220	0.913	3.258	threading_1	M-EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQ-HYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQRETTLVWDKDGKPLYNAIVWQCRRTAEMVEEIKRGEVMFGTVDTFLIYRLTGEHVTDYSNASRTMLFNIKKLDWD--DELLELFDIPESVLPEVRESSEVYGYTKKE-----LLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVYSDNLLTTIAWGLNGRYALEGSIFVT-GAAVQWLRDGIK--IIKHASETEELATKLESNEGVYFVPAFVGLGAPY------WDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKL--VQIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREIAEL-WKAERIFEPKKTRERLYKGWKEAVKRAMGWA-------------------KVVDS---A
2	SPARKS	3kzba	0.190	0.900	6.380	threading_2	LA-FYIATFDIGTTEVKAALADRDGGLHFQRSIALET-YGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDARRVSAIVLSGQQ-NFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHVVLGAK-DYVVLRLTGRHATDRTNASTTGLYRPKDDAWH--VELLADYGFSLDL-PRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPDPVGTIFRLAGIIAGKTLQVAPVLNAG-NILQWALTLVGHRPCAEYFHAAAEVQGVTVPDGLLFVPYLHAERCP------VELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL----GEKVGLLKVVGGGARSEAWLRIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADRESNILHPQGRRRRKFERFKQCVETLGR------------------------------
3	PROSPECT2	2itmA	0.211	0.894	5.098	threading_3	M----YIGIDLGTSGVKVILLNEQGEVVAAQTEKL-TVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQ--DVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLERQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVAKRDWSDV--MLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHFCHALPQRWHLMSVMLSAAS-CLDWAAKLTG-----------LSNVPALIAAAQQADESAEPV-----WFLPYLSPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV-HACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDGPALGAARLAQIAANPEKSLIELLPQL-PLEQSHLPDAQRYAAYQPRRETF-RRLYQQLLPLM----------------------A
4	PPA-I	2zf5O	0.216	0.913	4.975	threading_4	-MEKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQ-HYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQRETTLVWDKDGKPLYNAIVWQCRRTAEMVEEIKRGEVMFGTVDTFLIYRLTGEHVTDYSNASRTMLFNIKKLDWD--DELLELFDIPESVLPEVRESSEVYGYTKKE-----LLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVYSDNLLTTIAWGLNGRYALEGSIFVT-GAAVQWLRDGIK--IIKHASETEELATKLESNEGVYFVPAFVGLGAPY------WDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKL--VQIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREIAEL-WKAERIFEPKKTRERLYKGWKEAVKRAMGWAKVVDSA----------------------
5	HHPRED-l	3ll3_A	0.207	0.904	3.935	threading_5	-SLKYIIG-DVGTTATKGVLYDINGKAVASVSKGYP-LIQTKVGQAEEDPKLIFDAVQEIIFDLTQK--IDGK-IAAISWSSQ-HSLIGLGSDDELLTNSITWADNCAKSIVQDAKNQAQKWIGIKEYIIFRLTGKLVTDTT-AAGTGILNLKTLTWDQE--LLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPS-AS-YFCYPAKTHYLLGGPVNNGGIVFNWARQTLFDA--------DETPQDFLD-VAQTAPAGSRNLPYLGGERAPIWDANARGSFVGLTR-HQKPE-ARAVIEGIIFNLYDAASNLIK-NTKKPVAINATGGFLKSDFVRQLCANIFNVPIVT-KEQQSGTLAA-FLARQALGLNQDL-SEIGQFAQADKVYFPNPKEAATYQKLFP-LYCEIRNALAASYGKFS-------------------
6	HHPRED-g	2d4w_A	0.217	0.919	3.248	threading_6	--ADYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQI-FPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQRETAVVWDKTGKPVYNAIVWQDTRTQKIVDELGPKIKWIGNTDTWVLWNMTGVHVTDVTNASRTMLMDLDTLSWRED--IAADMGIPLSMLPDIRSSSEVYGHGRPR-----GLVPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKSKNGLLTTVCYKIPAVYALEGSIAV-TGSLVQWLRDNL--GMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPY------WRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVIDNW-AEDKRWSPSMESGER-ERLYRNWKKAVTKTMEWVDEDVE-------------------
7	SP3	3kzba	0.190	0.896	6.470	threading_7	LA-FYIATFDIGTTEVKAALADRDGGLHFQRSIALE-TYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDARRVSAIVLSGQQNFLP-LDQDHEPLHRAVLYSDKRPLKEAEEINLRHVVLGAK-DYVVLRLTGRHATDRTNASTTGLYRPKDDAWH--VELLADYGFSLDL-PRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPDPVGTIFRLAGIIAGKTLQVAPVLNAG-NILQWALTLVG--HRPGEDCAEYFHAGVTVPDGLLFVPYLHAERCPV------ELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL----GEKVGLLKVVGGGARSEAWLRIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADRESNILHPQGRRRRKFERFKQCVETLGR------------------------------
8	SAM-T99	2zf5O	0.218	0.904	4.003	threading_8	M-EKFVLSLDEGTTSARAIIFDRESNIHGIGQY-EFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQRETTLVWDKDGKPLYNAIVWQCRRTAEWLLDNVPGLRKFGTVDTFLIYRLTGEHVTDYSNASRTMLFNIKKLDWDDE--LLELFDIPESVLPEVRESSEVYGYTKKEL-----LGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRYALEGSIFVTGAAVQWLRDGIKIIK----------HASETEELATKLE-SNEGVYFVPAFGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEK--LVQIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTRE-IAELWKAERIFEPKMDEKTR-ERLYKGWKE-AVKRAMGWAK----------------------
9	MUSTER	3h3nX	0.213	0.917	3.214	threading_9	AEKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQ-YFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTGQPIANAIVWQSRQSSPIADQLKNGELLFGTIDSWLVWKLTDGHVTDYSNASRTMLYNIHKLEWD--QEILDLLNIPSSMLPEVKSNSEVYGHTRS----YRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPSDNDLLTTIGYGINGYYALEGSIFVA-GSAIQWLRDGLR--MIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPY------WDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELKSM-AEEGQMFTPEEERDNLYEGWKQAVAATQTFKFK---AK---------------------
10	SPARKS	3ll3a	0.177	0.907	6.255	threading_10	--SLKYIIGDVGTTATKGVLYDINGKAVASVSKGYPL-IQTKVGQAEEDPKLIFDAVQEIIFDLTQKID---GKIAAISWSSQH--SLIGGSDDELLTNSITWADNCAKSIVQDAKNRGFKWIGIKEYIIFRLTGKLVTD-TTAAGTGILNLKTLTWD--QELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKPSASYFCYPAD--KTHYLLGGPVNNGG-IVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAP------IWDANARGSFVGLTRHQK--PEARAVIEGIIFNLYDAASNLIKNTK-KPVAINATGGFLKSDFVRQLCANIFNVPIVTKE--QQSGTLAAFLARQALGLNQDLSEIGQ-FAQADKVYFPNPKEAATYQKLFPLYCEIRNAL-AASYGKFS-------------------

Predicted Tertiary Structure


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TM-score=0.634 to 1huxA SCOP code=c.55.1.5	TM-score=0.635 to 1huxA SCOP code=c.55.1.5	TM-score=0.556 to 2aa4A SCOP code=c.55.1.10	TM-score=0.558 to 1huxA SCOP code=c.55.1.5	TM-score=0.633 to 1huxA SCOP code=c.55.1.5