Template-based Modeling Results for YFJR_ECOLI

Submitted Primary Sequence

>Length 233
MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCEEEEECCCCCCCEECCCCCCCCHHHHHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
55323433320020002001102323212032003201121100220032101201021221101022211323212201100120001110211132003101312322001022222222211200120020022322010113332223010010002320000000122200001022032021143213333201310322201320220200110001222232349
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
1	PROSPECT2	1bia_	0.113	0.953	1.539	threading_1	MKDN--------TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRWGVDVFTVPGKGYSLPEPIQLLNAKQILGQLDGGSVAPVIDSTNQYLLDRIGELKSGDACIAEYQQEQPAAAIGLSLVIGIVMAE---VLRKLGADKVRVKWPNDLYLQDRKLGILVELTGAAQIINMAMWITLQEAGINLDRNTLAAMLIRESRWEKLDNFINRPVKLIIPWMGGEISLR
2	SPARKS	1j5ya	0.158	0.571	1.433	threading_2	-------KTVRQERLKSIVRILESKEPVSGAQLAEELSVSRQVIVQDIAYLRSGYNIVATPRGYVLAGGKSAPEEIKEELLCVVRNGIRGIIDVSSEEEVLKFVNLEAKTEPLLTLSGEAPDEETERIRELKKK-------GFLIEE--------------------------------------------------------------------------------------
3	PROSPECT2	1q7mA1	0.113	0.953	1.175	threading_3	MRNRREVSKLLSERVLKVHRSYIETFGATRMKLRDKLDPIVRNAVRIARRAAGEKLVFGDIGPTGELPYPLGSTLFEEFYENFRETVEIILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIELSQYTDKFLVVEPNAGKPIV-----------ENGKTVYPLKPHDFAVHIDSYYELGHVKLFRKVLGNRKPLQRKKK
4	HHPRED-l	1j5y_A	0.152	0.567	1.580	threading_4	-------KTVRQERLKSIVRILERKEPVSGAQLAEELSVSRQVIVQDIAYLRSGYNIVATPRGYVLAGGKSVAVKHAPEEIKEELLCVVRNYEEEVLKFVNL---AKTEPLLTLSHLHTIEAPDEET-ERI-RELKKKG---FLIEE--------------------------------------------------------------------------------------
5	HHPRED-l	3sqn_A	0.119	0.867	1.164	threading_5	-LKR-VITEKDLLRQIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQWSIETDSSGIRLRNQ---QTFLPQSISIQLLKELTSFLSETLKRHIKK-NQALRDFHLTIQT-TFFDDYHEEHYFQFLKQVYSSELT---VETEEI--FG--------ACWFFINT----------IRNKANCVSQFSFSKDVLFQPSLAKLSEGIYLQGEEFAFFCFLNYDYGETLS-
6	HHPRED-g	1j5y_A	0.141	0.549	2.640	threading_6	-------KTVRQERLKSIVRILERKEPVSGAQLAEELSVSRQVIVQDIAYLRLGYNIVATPRGYVLAGGKLVAVKHAPEEIKEELLCVVRNGEEEVLKFVNL---TLSGGVHLHT----IEAPDEET-ERI-RELKKKG---FLIEE--------------------------------------------------------------------------------------
7	SP3	1j5ya	0.127	0.708	1.130	threading_7	-------KTVRQERLKSIVRILERKEPVSGAQLAEELSVSRQVIVQDIAYLRSGYNIVATPRGYVLAGGK---------SGVSRLVAVKHAPEEIKEELLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLE-----AKTEPL---LTLSGGVHLHTIEAPDEET------ERIRELKKKGFLIEE--------------------------------------
8	SAM-T99	1j5yA	0.119	0.468	1.186	threading_8	---------VRQERLKSIVRILERSKEVSGAQLAEELSVSRQVIVQDIAYLRLGYNIVATPRGYVLAGGK----------GVSRLVAVKHAPEEIKEELLCVVRNGGRIDVIVEHPVYGEIRGIIDVS---------------------------------------------------------------------------------------------------------
9	SPARKS	1bia_	0.112	0.918	1.050	threading_9	--------MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDGVDVFTVPGGYSLPE---PIQLLNAKQILGQLDGGSVAVLPVTNQYLLDRIGELKSGDACIAEYLEQPAAAIGLSLVIGIVMAEVDKVRVKWPNDLYRKLAGILVELTGAAQIVIGAGIN------MAMWITLQEAGINLDRNRELRAALELSRWEKLDNFIN--RPVKLIIGDKEIFGI
10	PROSPECT2	1mkma	0.077	0.777	1.168	threading_10	MNT--------LKKAFEILDFIKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKDKRYVPGY---------KLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLLKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSI-----SGVARKF-----------TEEKIEEYSDVEEISRKLGY-------------------

Predicted Tertiary Structure


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TM-score=0.631 to 2ewnA SCOP code=a.4.5.1	TM-score=0.588 to 1j5yA SCOP code=a.4.5.1	TM-score=0.766 to 3bofA SCOP code=c.1.21.2	TM-score=0.583 to 1j5yA SCOP code=a.4.5.1	TM-score=0.537 to 1j5yA SCOP code=a.4.5.1