Template-based Modeling Results for YFCS_ECOLI

Submitted Primary Sequence

>Length 250
MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRKG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRKG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCEEEEEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRKG
3331100011000000000000000011000022000003433320101021233410000000022343332312000001112023222010000023424413222110000002201343443110000010102000103214422232222120101222210001231100000010102432332221222213121101010323210000000011010201020322201022243567
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTPYYVIISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFQCNGNSCQVDEEQSRKG
1	MUSTER	3dpaA	0.424	0.868	2.689	threading_1	----------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQD-QLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVKKEK----
2	SPARKS	1qpxa	0.415	0.820	5.419	threading_2	----------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPP---------IALCTKIKLFYRPAAIKTRPNEVWQ-DQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK-------
3	PROSPECT2	1qpxa	0.405	0.820	3.548	threading_3	----------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPIA---------LCTKIKLFYRPAAIKTRPNEVWQD-QLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSV-------K
4	PPA-I	3q48A	0.268	0.760	2.671	threading_4	------------------------------IAQGTRVVFPASEREVTLRVSNTSG-TPVLAQAWIDDGRQDELQVPFSVTPAVTRVEPNGGAVLRIAYLK--APLPTDRESLFWLNILEVPP--------RFSFRSRFKLFFRPSQLKS-VDSAAGKLQWKFL---EVVQVNNPTPYYVSFASVELIVDGRVMS-VGKGMVAPFSTKEFDWMEAASVRYEVINDYGGRNTHDRALG--------------
5	HHPRED-l	2co7_B	0.214	0.784	5.520	threading_5	-----------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNY-PILVQSSVKAADK-SSPAPFLVMPPLFRLEANQQSQLRIVRT--GGDMPTDRETLQWVCIKAVPPE---TLDLNLSINACDKLIFRPDAVKGTPEDVA--GNLRWVETGNKLKVENPTPFYMNLASVTVGGKPIT----GLEYVPPFADKTLN---HGDIEWRVITDFGGESHFHYVL---------------
6	HHPRED-g	2co7_B	0.221	0.780	4.712	threading_6	-----------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQN-YPILVQSSVKAADKS-SPAPFLVMPPLFRLEANQQSQLRIVRT--GGDMPTDRETLQWVCIKAVPPE----LDLNLSINACDKLIFRPDAVKGTPEDV--AGNLRWVETGNKLKVENPTPFYMNLASVTVGGK--PIT--GLEYVPPFADKTLN---HGDIEWRVITDFGGESHFHYVL---------------
7	SP3	1qpxa	0.415	0.820	4.938	threading_7	----------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPP---------IALCTKIKLFYRPAAIKTRPNEVWQ-DQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK-------
8	SAM-T99	3dpaA	0.429	0.868	5.343	threading_8	----------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEV-WQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVKKEK----
9	MUSTER	3q48A	0.268	0.760	2.678	threading_9	------------------------------IAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDELQVPFSVTPAVTRVEPNGGAVLRIAYLK--APLPTDRESLFWLNILEVPP--------RFSFRSRFKLFFRPSQLKS-VDSAAGKLQWKFL---EVVQVNNPTPYYVSFASVELIVDGRVMS-VGKGMVAPFSTKEFDWMEAASVRYEVINDYGGRNTHDRALG--------------
10	SPARKS	3q48a	0.268	0.760	5.223	threading_10	------------------------------IAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDELQVPFSVTPAVTRVEPNGGAVLRIAYLK--APLPTDRESLFWLNILEVPP--------RFSFRSRFKLFFRPSQLKS-VDSAAGKLQWK---FLEVVQVNNPTPYYVSFASVELIVDGRVMS-VGKGMVAPFSTKEFDWMEAASVRYEVINDYGGRNTHDRALG--------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.924 to 3dpaA SCOP code=b.1.11.1	TM-score=0.924 to 3dpaA SCOP code=b.1.11.1	TM-score=0.879 to 3dpaA SCOP code=b.1.11.1	TM-score=0.843 to 3dpaA SCOP code=b.1.11.1	TM-score=0.785 to 1ze3C SCOP code=b.1.11.1