Template-based Modeling Results for YEBC_ECOLI

Submitted Primary Sequence

>Length 246
MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHEEECCCCCHHHHHCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
554202111011221031232021012002100100431211142002011001101433113300120023022234322011000201011100000100021322001100200230203112310000001110001034221310020003021211222432101000113101201200331212011010100222413022310220130031034033021000103122300322
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
1	MUSTER	1konA	0.996	0.947	3.707	threading_1	--GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLD-----ANPRLRAAVDKALSNNMTRDTLNRAIARG------ANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
2	SPARKS	1lfpa	0.437	0.967	6.937	threading_2	----SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKAN-PWENIERAIKKGAGELEGEQFEEVIYEGYAPGGV-AVVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKSEEELLEKAIEVGAEDVQPGEE-VHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQIDEETAQKVIKLLNALEELDDVQQVIANFEIPEEILQK-
3	PROSPECT2	1konA	0.987	0.947	4.167	threading_3	--GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLDA-----NPRLRAAVDKALSNNMTRDTLNRAIAR------GANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
4	PPA-I	1konA	0.987	0.947	5.468	threading_4	--GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLD-----ANPRLRAAVDKALSNNMTRDTLNRAIARGAN------METIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
5	HHPRED-l	1kon_A	1.000	0.943	8.523	threading_5	--GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKL-----DANPRLRAAVDKALSNNMTRDTLNRAIARG------ANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAAT-
6	HHPRED-g	1kon_A	1.000	0.947	7.194	threading_6	--GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKL-----DANPRLRAAVDKALSNNMTRDTLNRAIARG------ANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
7	SP3	1lfpa	0.433	0.967	7.111	threading_7	----SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKK-ANPWENIERAIKKGAGELEGEQFEEVIYEGYAPGGV-AVVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAVSEEELLEKAIEVGAEDVQPGEEV-HIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQIDEETAQKVIKLLNALEELDDVQQVIANFEIPEEILQK-
8	SAM-T99	1lfpA	0.441	0.967	6.714	threading_8	----SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKAN-PWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAV-VLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAVSEEELLEKAIEVGAEDVQPGEEV-HIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQIDEETAQKVIKLLNALEELDDVQQVIANFEIPEEILQK-
9	MUSTER	1lfpA	0.441	0.967	3.612	threading_9	----SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKAN-PWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVVLAT-TDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKSEEELLEKAIEVGAEDVQPGEE-VHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQIDEETAQKVIKLLNALEELDDVQQVIANFEIPEEILQK-
10	SPARKS	1mw7a	0.307	0.862	6.477	threading_10	----------------------KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASS--KEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKQGASIVPNGSLEFMFNRKSVFECLKNSLEDLEFALIDYGLEELEEVEDK-IIIRGDYNSFKLLNEGFESLKLPILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNIE---------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.970 to 1konA TM-score=0.997 to native SCOP code=e.39.1.1	TM-score=0.968 to 1konA TM-score=0.995 to native SCOP code=e.39.1.1	TM-score=0.973 to 1lfpA TM-score=0.790 to native SCOP code=e.39.1.1	TM-score=0.967 to 1konA TM-score=0.993 to native SCOP code=e.39.1.1	TM-score=0.968 to 1konA TM-score=0.994 to native SCOP code=e.39.1.1

Experimental Structure

Download 1konA

SCOP code=e.39.1.1