Template-based Modeling Results for YDIP_ECOLI

Submitted Primary Sequence

>Length 303
MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVSLVG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVSLVG
CCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECEEEEEECCEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEEECHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVSLVG
553212332232001123124001000112231311200021101000012010200033120102211000012121000002442201000000101212122112002221122122121230022002101201332332211000100010001000210332232332223212002100200141042302031004204001100020003215100120011110110120133232201200230113103100200041130002201320452223332223132212224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAILYYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVSLVG
1	MUSTER	3gbgA	0.090	0.845	2.308	threading_1	----------------KKSFQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSDENINVSVITISDSFIR-SLKSYILGNKDLLLWNCEH---NDIAVLSEVVNGF--REINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLD-----AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
2	SPARKS	3gbga	0.098	0.845	3.576	threading_2	----------------KKSFQTNVYRMSKFDTYIFNNLYIND-YKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLTSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGF-----REINYSDEFLKVFFSGFFSKV------EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
3	PROSPECT2	3gbgA	0.094	0.845	3.911	threading_3	---------KKSFQT-------NVYRMSKFDTYIFNNLYIND-YKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGF-----REINYSDEFLKVFFSGFFSKV------EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
4	PPA-I	3gbgA	0.105	0.848	2.907	threading_4	-----------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLTLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEH------NDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLD----AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
5	HHPRED-l	3gbg_A	0.102	0.812	3.840	threading_5	-------------------KKSFQTNVYRMSKFDTYILYIN-DYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLLSDENINVSVITISDSFIRSLKSYI------KDLLNEHNDIAVLSEV----VNGFREIN-YSDEFLKVFFSGFFSKV-E---KK-YN-SIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
6	HHPRED-g	3gbg_A	0.100	0.822	3.638	threading_6	-------------------KKSFQTNVYRMSKFDFNNLYIN-DYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLLSDENINVSVITISDSFIRSLKSYILG----KDLLNCEH---NDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEKKYNS------IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
7	SP3	3gbga	0.090	0.845	3.569	threading_7	---------KKSFQTN-------VYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSLSDINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGF------REINYSDEFLKVFFSGFFSKVE-----KKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV------------------
8	SAM-T99	2k9sA	0.220	0.330	2.971	threading_8	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRVREACQYISDHLADNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR------------------------
9	MUSTER	1xs9A	0.225	0.426	1.276	threading_9	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMT--NMQGESRFLHPLNHYNS---
10	SPARKS	2k9sa	0.217	0.350	2.181	threading_10	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE--------------------

Predicted Tertiary Structure


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TM-score=0.485 to 1xjaC SCOP code=b.82.4.1	TM-score=0.475 to 1xjaC SCOP code=b.82.4.1	TM-score=0.475 to 1xjaC SCOP code=b.82.4.1	TM-score=0.476 to 1xjaC SCOP code=b.82.4.1	TM-score=0.482 to 1xjaC SCOP code=b.82.4.1