Template-based Modeling Results for YDHS_ECOLI

Submitted Primary Sequence

>Length 534
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEEEEEEECCEEEEEECCCCCEEEECEEEEECCCCCCCHHCCCCCCCCCCCCCCHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCEEEEEECCEEEEECEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
421000000000000000000333220101001223311100011333313111121122312211120021024222210231113332232331111110020022002200210343401100021020110222331011002442221100000001011123333113211211121123122321200000000000000000023221112233320001123233412000001211113122202222211310133002101231332103200300021032122211220112112131002011112322211210130022023234343211121002101300220042013310320030002001001010013002201102411102001314212021232100021331211010000021231141431212000210141233013113212022131130200000001011201102000001200210031012101313432234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
1	MUSTER	3gwdA	0.139	0.835	1.111	threading_1	TVDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADGPGGTWYWNR-YPGALSDTESHLYRFSFDRDLLQES------------------TWKTTYITQPEILEYLEDVVDRF--------LRRHFKFGTEVTSALYLDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLTIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVE---------------------HLTVFVRTPQYSVPVGNRP--------VNPEQIAEIKAD-----YDRIWERAKNS-AVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEA-----ANEAAASFIRAKVAEIIED------PETARKLMPKGLFAKRPLCDSGY---YEVYNRPNVEAVAIKENPIREVTAKGVVTE-DGVLHELDVLVFATGFD-------AVDGNYRRIEIRGRDGLHINDHWD-GQPTSYLG-VSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERN-GVR
2	SPARKS	2xvea	0.127	0.794	2.749	threading_2	-TRIAILGAGPSGMAQLRAFQSAQEKPELVCFEKQADWGGQWNYTWRTGL--------DENGEPVHSSMYRYLWSNGPKECLEFADYTFGKPIASYPPREVLWDYIKGRVEK-------AGVRKYIRFNTAVRHVEFNEQTFTVTVQDHTTSEEFDYVVCCTGHFSTPYVPEFEGFFGGRILHAHDFRDADKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT---APMGYKWPENWDE---RPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKF-----FYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMT-DYPSFDIPATNKTFLEWKHHKKENIMTFR----DHSYRSLMTGTMAP---------KHHTPWIDALDDSLEAYLSDK---------------------------------------------------------------------
3	PROSPECT2	1w4xA	0.101	0.852	2.377	threading_3	RRDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGA--RCDIESIEYCYSFSEEVLQE-----------------WNWTERYASQPEILRYINFVADK-------FDLRSGITFHTTVTAAAFDATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE---------------------LFVFQRTPHFAVPARNAPLD--------PEFLADLKKR---------YAEFREESRNTPGG------THRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPF-----GTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRT--SEREYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNVEHVNEIADET
4	PPA-I	1vqwA	0.147	0.674	1.322	threading_4	IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLTEPIVGPAALPVYPSPLYRDLQTNTPIEL-GYCDQSFKPQTLQFPHRHTIQEYQRIYAQ---------PLLPFIKLATDVLDIEKKDGSWVVTYKGTKAKDIFDAVSICNGHYEVPYIPNIKGAVPGSVLHSSLFREPGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELFSKDATYINKLHDWCKQATPVPSPYWGEKERSIRENWSIRAKFFGIE--------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1w4x_A	0.146	0.809	2.273	threading_5	EVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPG-----------ARCDIESIEYCYSF--SEEVLQ------EWNWTERYASQPEILRYINFVADK-------FDLRSGITFHTTVTAAAFDEANTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLHTGNWPH-EPVDFSGQRVGVIGTGSSGIQVSPQIAKQA---------------------AELFVFQRTPHFAVPARNAPLDPEF--------LADLKK---------RYAEFREESRNTPGGTHRYQGPKSVSDEELVE-------------TLERYWQEGGPDIRDIRDDANERVAEFIRNKIRNTVR--D----PEVAERLVPKGYPFGTKRLILEIDYYEMF-NRDNVHLVDTLSAPIETITPRGVR--TSEREYELDSLVLATGFDALT------GALF-KIGVGNVALKEKWAAG----PRTYLG-LSTAGFPNLFIAGPGSPNMLVSIQHVEWVTDHIAYMFKNGLTRSEA-
6	HHPRED-g	2gv8_A	0.153	0.721	4.381	threading_6	IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSVGPAALPVYPSPLYRDLQTNTPIEL-GYCDQSFKPQTLQFPHRHTIQEYQRIY-------AQPL--LPFIKLATDVLDIEKKDGSWVVTYKGTISKDIFDAVSICNGHYEVPYIPNIKGLVPGSVLHSSLFREPGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNES-----LQQ---VPEITKFDTREIYLKGGKVLNIDRVIYCTGYLYSVPFPSLAETKLIDDGSHVHNVYQHIFYIPDPT-----LAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDEL-FSLSGANNLDYPKDATYINKLHDWCKQATPERSIREN-WSIRAKFFGIE----------------------------------------------------------------------------------------------------------------------------
7	SP3	2xlpa	0.128	0.792	2.938	threading_7	ATRIAILGAGPSGMAQLRAFQSAQEKPELVCFEKQADWGGQWNYTWR--------TGLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFASYPPREVLWDYIKGRVEK-------AGVRKYIRFNTAVRHVEFNEDTFTVTVQDHTTSAAFDYVVCCTGHFSTPYVPEFEGFFGGRILHAHDFRDADKTVLLVGSSYSAEDIGSQCYKYGAKKLI-----SCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKV-DAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKF-----FYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMT-DYPSFDIPATNKTFLEWKHHKKENIMTFRDHS---------------YRSLMTGTMAPKHHTIDALDDSLEAYLSDK---------------------------------------------------------------------
8	SAM-T99	1e6eA	0.125	0.687	2.810	threading_8	--QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV-----------------------------------------------------KNVINTFTQTARSDRC--AFYGNVEV--------GRDVTVQE--LQDAYHAVVLSYGAEDHQAL-DIPGGWYNGLPENLAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVA------------FTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMERTATEKPGVEEAARRASA-----------------------------------------------SRAWGLRFFRSPQQVLPSP----------DGRRAAGIRLAVTRLEGI--GEATRAVPTGDVEDLPCGLVLSSIGYKSRPDPSVPF-----------DPGVVPNMEGRVVD-----VPGLYCSGWVKRGPTGV---ITTTMTDSFLTGQILLQDLK---------
9	MUSTER	2vq7C	0.126	0.775	1.101	threading_9	-TRIAILGAGPSGMAQLRAFQSAQEIPELVCFEKQADWGGQWNYTWRTG--------LDENGEPVHSSMYRYLWSNGPKECLEFADYTFGKPIASYPPREVLWDYIKGRVEKA--------VRKYIRFNTAVRHVEFNEQTFTVTVQDHTTSAAFDYVVCCTGHFSTPYVPEFEGFILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISRTAPMGYKWPENWDERPNLVRVDTENAYFADGSS-EKVDAIILCTG--------IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKF-----FYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPIPATNKTFLEWKHHKKENIMTFRDH-------------------SYRSLM--TGTMAPKHHTPWIDALLEAYLSDK--------------------------------------------------------------------
10	SPARKS	2xlpa	0.125	0.796	2.717	threading_10	ATRIAILGAGPSGMAQLRAFQSAQEKPELVCFEKQADWGGQWNYTWRTGL--------DENGEPVHSSMYRYLWSSGPKECLEFADYTFGKPIASYPPREVLWDYIKGRVEK-------AGVRKYIRFNTAVRHVEFNSQTFTVTVQDHTTSAAFDYVVCCTGHFSTPYVPEFEGFFGGRILHAHDFRDADKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT---APMGYKWPENWDERPN---LVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKF-----FYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMT-DYPSFDIPATNKTFLEWKHHKKENIMTFR----DHSYRSLMTGTMAP---------KHHTPWIDALDDSLEAYLSDK---------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.801 to 1w4xA SCOP code=c.3.1.5	TM-score=0.774 to 1vqwA SCOP code=c.3.1.5	TM-score=0.713 to 1vqwA SCOP code=c.3.1.5	TM-score=0.803 to 1w4xA SCOP code=c.3.1.5	TM-score=0.698 to 1vqwA SCOP code=c.3.1.5