Template-based Modeling Results for YDGH_ECOLI

Submitted Primary Sequence

>Length 314
MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEECEEECCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHCCEEEECCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK
43211011000000000000100220133102313311100010212012200410031035331200000001222321201000100213143043221100100120133112302211001020013121301200020043331200000010003321221000000243143221312310111130010001221311331202000122222231010012222422211020241220120231002201210101010011221201120022035320200000110255232010101135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK
1	PROSPECT2	1s8eA	0.105	0.908	1.288	threading_1	MKFHKPQREEEFAEAFKNALEIAVQEN---------VDFILIAGSSRPSPGTLKKAIAIPKEHSIPVFAIEGNLVRTQRGPSVLNLLEDFGLVYVIGMRKEKVENESERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLF------------RPTDNAILMLHQGVREVSEARGEDYFEIG------LGDLPEGYLKRYETSYSGSPSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKVRPFIDVKIKGS--EEEIRKAIKRLIPLIPKYVRLNIGWRKPFDLYLKIDTWRI
2	SPARKS	2jnaa	0.232	0.315	1.365	threading_2	MK-KRIIAAALLATVASFSTLAAEQVSKQEISKLVKVGTINVSQSGGSPSDLREKLSELADAKGGKYYHIIAAREHG--PNFEAVAEVYN-DATKLEHHHHHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	3e4oA	0.140	0.726	1.277	threading_3	AGLAGQSRIDASLKASLLRAVVERQRAPLVLADDAAIRGALLSPDRPSLDRINRKLEALATSAEAAVIYLID-----RSGVAVAA----------SNWQEPTSFVGNDYAFRDYFRLAVRDGAEHFAGTVSKRPGLYDGVEADWQASGKPAYVT------DRRGI-----VLITSLPSWRFTTKPI-----AEDRLAPIRESLQ-----------FGDAPLLPLPFRKIEARPDGSSTLDALLPG------------------------------------------DSTAAFLRVETVPSTNWRLEQLSPL--
4	PPA-I	2jnaA	0.232	0.315	1.228	threading_4	MK-KRIIAAALLATVASFSTLAAEQVSKQEISHFKLINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAARE--HGPNFEAVAEVY-NDATKLEHHHHHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1fc6a	0.075	0.936	1.270	threading_5	VTSEQLLFLEAWRAVDRFNGQSWFKLRETYLKKEP------------DRRAQTYDAIRKLAVLDDPFTRFLERRGTAGSVTGVGLEITYDGGSG-----KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGSLYDVSDLLQGEADSQVEVVLHQLTRQKVTINPVTFTTCSNVAAAALPPGAAKLATFNSNTTAAAQQAFTELSKQGVAGLVRNNGGGLFPAGVNVARLVDRGDLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTAS---ASEVLAGALKDSKRGLIAVVDLSDGSGVAVTVARYQT
6	HHPRED-l	2jna_A	0.172	0.315	5.648	threading_6	MKK-RIIAAALLATVASFSTLAAEQVSKQEISKLVKVGTINVSQSGSSPSDLREKLSELADAKGGKYYHIIAAREH--GPNFEAVAEVYNDATKLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	1ii7a	0.123	0.882	1.248	threading_7	MKFHKPQREEEFAEAFKNALEIAVQEN---------VDFILIASSRPSPGTLKKAIAQIPKEHSIPVFAIEGNHDRTQRGPSVLNLYVIGMRKEKVENEYLTS----ERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLF------------RPTDNAILMLHQGVREVSEARGEDYFEIG------LGDLPEGYLKRYETSYSGSPSLERWDFGDYEVFKERYGVNKGFYIVEDFKPRFVEIK------VRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGTEIKELLNVEYLKIDTWR
8	HHPRED-g	2jna_A	0.172	0.315	5.552	threading_8	MKKRII-AAALLATVASFSTLAAEQVSKQEISKLVKVGTINVSQSGSSPSDLREKLSELADAKGGKYYHIIAAREH--GPNFEAVAEVYNDATKLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	1s8eA	0.116	0.933	0.553	threading_9	MKF---AHLA-KPQREEEFAEAFKNA-LEIAVQEN-VDFILIAGPSPGTLKKAIALLQIPKEHSIPVFAIEGNLVRTQRGP--SVLNLLEDFGLMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVRE-------VSEARGEDYFEIGLGDLPEGYL----YYALGHIKRYETSYSGVVYPGSLRWDFGDYEVRYEWDGIKFKERYGVGFYIVEDFKPRFVEIKVRPFIDVKIK-GSEEEIRKAIKRLIPLIPKNYVRLNIGWRKPFDL-LLNVEYLK
10	SP3	2jnaa	0.232	0.315	1.185	threading_10	MK-KRIIAAALLATVASFSTLAAEQVSKQEISKLVKVGTINVSQQISSPSDLREKLSELADAKGGKYYHIIAAREHG--PNFEAVAEVYN-DATKLEHHHHHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.703 to 1s8eA SCOP code=d.159.1.4	TM-score=0.502 to 2jnaA SCOP code=d.230.6.1	TM-score=0.579 to 2p7jB SCOP code=d.110.6.2	TM-score=0.424 to 2jnaA SCOP code=d.230.6.1	TM-score=0.588 to 1fcfA SCOP code=b.36.1.3