Template-based Modeling Results for YDAV_ECOLI

Submitted Primary Sequence

>Length 248
MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
54322112013102300121012103201213312112013202212332221202300231203322230212213132311220021022002201220200000021110110000000120043112000000120011012024223212200220130100000100114323311200020013102323000000202131012100200000011200100102231221222232235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
1	MUSTER	2w58A	0.212	0.722	1.935	threading_1	----------------------------------------------------KRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSQT----MNEKLDYIKKVPVLMLDDLGAESW--VRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHKAARIMERIRYL-AYPIEITGPNRR----------
2	SPARKS	2w58a	0.212	0.722	3.208	threading_2	----------------------------------------------------KRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK----HSQTMNEKLDYIKKVPVLMLDDLGAESWVRDD--VFGPILQYRMFENLPTFFTSNFDMQQLAHVKAARIMERIRYL-AYPIEITGPNRR----------
3	PROSPECT2	2w58A	0.212	0.722	2.464	threading_3	KR----------------------------------------------------QESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSQTM----NEKLDYIKKVPVLMLDDLGAESWVRDD--VFGPILQYRMFENLPTFFTSNFDMQQLAHHLAARIMERIRYL-AYPIEITGPNRR----------
4	PPA-I	3eccA	0.221	0.694	2.462	threading_4	----------------------------------------------------------------AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKGIRGYFFDTKDLIFRLKHLMDEGKD-TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSSADLASRLGENVVSKIYEM-NELLVIKGSDLR----------
5	HHPRED-l	2qgz_A	0.186	0.714	2.764	threading_5	-------------------------------------------------QKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAQKGLYLYGDMGIGKSYLLAAMAHELSKKGVSTTLLHFPSFAIDVKNAIS-----KEEIDAVKNVPVLILDDIGA------VRDVLQVILQYRMLEELPTFFTSNYSFADLERKWAKRVMERVR-YLAREFHLEGANRR----------
6	HHPRED-g	2qgz_A	0.189	0.681	2.615	threading_6	--------------------------------------------------QKQAAISERIQLVSLPRHIHLSDIDVNNA---SRMEAFSAIL---DFVEQQKGLYLYGDMGIGKSYLLAAMAHELSKKGVSTTLLHFPSFAIDVKNAIS----KE-EIDAVKNVPVLILDDIGA------VRDVLQVILQYRMLEELPTFFTSNYSFADLERKW-KRVMERVRYL-AREFHLEGANRR----------
7	SP3	2w58a	0.208	0.718	3.356	threading_7	-----------------------------------------------------KRQESLIQSMFMPREILRASLDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSQTM----NEKLDYIKKVPVLMLDDLGAESWVRD--DVFGPILQYRMFENLPTFFTSNFDMQQLAHVKAARIMERIRYL-AYPIEITGPNRR----------
8	SAM-T99	3eccA	0.222	0.690	3.296	threading_8	-----------------------------------------------------------------KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKGIRGYFFDTKDLIFRLKHLMDEGK-DTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQRLASRLGENVVSKIYEMN-ELLVIKGSDLR----------
9	MUSTER	3eccA	0.221	0.694	1.926	threading_9	--------------------------------------------------------------AKRYWNANLD--TYHPKNVSQNRALLTIRVFVHNFPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKGIRGYFFDTKDLIFRLKHLMDEGKD-TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSSADLASRLGENVVSKIYEM-NELLVIKGSDLR----------
10	SPARKS	3ec2a	0.208	0.698	2.753	threading_10	----------------------------------------------------------------AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKGIRGYFFDTKDLIFRLKH-LDEGKD-TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQRSSVRISADLASRLGENV--VSKIYENELLVIK-------

Predicted Tertiary Structure


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TM-score=0.722 to 1l8qA SCOP code=a.4.12.2	TM-score=0.722 to 1l8qA SCOP code=a.4.12.2	TM-score=0.710 to 1l8qA SCOP code=a.4.12.2	TM-score=0.722 to 1l8qA SCOP code=a.4.12.2	TM-score=0.710 to 1l8qA SCOP code=a.4.12.2