Template-based Modeling Results for YCJQ_ECOLI

Submitted Primary Sequence

>Length 350
MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPFIDEDFNGEWQMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVIIETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNGYLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVTF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPFIDEDFNGEWQMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVIIETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNGYLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVTF
CEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPFIDEDFNGEWQMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVIIETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNGYLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVTF
21011022342010120223213321010202000000001001022211113331213232222222312311320201100100010010034133122010000201001100010022120020132011210000000000000022021320110000000000000010033110110000101231020034110100011222201210220125300100010011130011003001320100000003222321311221112202010010012322222221112003100200231203023001010102101300220134234210100021
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPFIDEDFNGEWQMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVIIETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNGYLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVTF
1	MUSTER	2ejvA	0.208	0.894	2.554	threading_1	MRALAKLAPEGLTLVDRPVPEPGPGEILVRVEAASI-CGTDLHIWKWD--------------------AWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLECPACRTGNYHVCLNENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDL-AGELVMRGITAFGIAGRRLW----------QTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQ---AVKVILDP
2	SPARKS	3m6ia	0.201	0.894	3.644	threading_2	NIGVFTNPQHDLWISEASPEELKEGEVTVAVRSTG-ICGSDVHFWKHGCI--------------------GPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVANACEPCLTGRYNGCPAVWCHKIG-NMSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVEEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPF--MRASVREVDLQFQY------------RYCNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPK-TGAIKVQIQS
3	PROSPECT2	1keva	0.229	0.897	4.237	threading_3	MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSP-CTSDIHTVFEGAL-----------------------GDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIKDGVFGEYFHVNDADMN-LAILPKDMPLENAVMIDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDAIPRVEWGCGMAHKTIKGGLCPG----------GRLRAEMLRDMVVYNRVDLSKLVTHVYHFDHIEEAL-LLMKDKPKDLIKAVVIL
4	PPA-I	1e3jA	0.182	0.894	2.927	threading_4	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGIC-GSDVHYYEHGRI--------------------ADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVECQFCKEGKYNLCPADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADLVVDPAKEEESSIIERIRSGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVP--LVNACAREIDIKSVFRYCN------------DYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARK-KADNTIKVMISC
5	HHPRED-l	2d8a_A	0.254	0.877	2.223	threading_5	-VAI-KTKPGYAELVEVDVPKPGPGEVLIKVLATSIC-GTDLHIYEWNEWAQS--------------------RIKPPQI-GHEVAGEVVEIGPGVEGIEVGDYVSVEDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEV-DITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTI-DFNNLIIFKALTIYGITGRH----------LWETWYTVSRLLQSGKLNLDPIITHKYKFDKYEEAFEL-RAG---KTGKVVF--
6	HHPRED-g	2d8a_A	0.263	0.849	1.897	threading_6	-VAI-KTKPGYAELVEVDVPKPGPGEVLIKVLATSI-CGTDLHIYEWNEW--------------------AQSRIKPPQI-GHEVAGEVVEIGPGVEGIEVGDYVCGKCY----------PAQNIWKNPKSIPPEYATLQEPLGNAVDTVLA-GPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEV-DITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTID-FNNLIIFKALTIYGITGR---------HLW-ETWYTVSRLLQSGKLNLDPIITHKYKFDKYEEAFEL-RAGK---TGKVVF--
7	SP3	3m6ia	0.204	0.894	3.865	threading_7	TIGVFTNPQHDLWISEASPEELKEGEVTVAVRSTG-ICGSDVHFWKHGCI--------------------GPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVANACEPCLTGRYNGCPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVEEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPF--MRASVREVDLQF-------QYRYCNT-----WPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPK-TGAIKVQIQS
8	SAM-T99	2dfvA	0.261	0.866	2.465	threading_8	EKVAIKTKPGYAELVEVDVPKPGPGEVLIKVLATS-ICGTDLHIYEWNEWAQS---------------------RIKPPQIGHEVAGEVVEIGPGVEGIEVGDYVCGKCYACRRGQYHVCPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEV-DITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVT-IDFNNLIIFKALTIYGITGRHLW----------ETWYTVSRLLQSGKLNLDPIITHKYKFDKYEEAFELRAGK------------
9	MUSTER	1e3jA	0.182	0.894	2.525	threading_9	NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGI-CGSDVHYYEHGRI--------------------ADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVECQFCKEGKYNLCPDLFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADLVVDPAKEEESSIIERIRSGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPL--VNACAREIDIKSV------------FRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARK-KADNTIKVMISC
10	SPARKS	1keva	0.221	0.906	3.373	threading_10	MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVS-PCTSDIHTVFEGAL-----------------------GDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIWRSLEVQAGFQQHSNGMNLAILPKDMPLENAVMIDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG--------GRLRAEMLRDMVVYNRVDLSKLVTHVYGFDHIEEALLLMKDKPKD-LIKAVVIL

Predicted Tertiary Structure


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TM-score=0.835 to 1e3jA SCOP code=b.35.1.2	TM-score=0.818 to 1e3jA SCOP code=b.35.1.2	TM-score=0.830 to 1pl7A SCOP code=b.35.1.2	TM-score=0.796 to 1qorA SCOP code=b.35.1.2	TM-score=0.857 to 1e3jA SCOP code=b.35.1.2