Template-based Modeling Results for YCFD_ECOLI

Submitted Primary Sequence

>Length 373
MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG
CCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEECCCHHHHHHCCCCCCEEEEECHHHHCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEECCCCEEEEEEEEEEEEEECCCCCHHHCCCCCCHHHCCCCCCEEEEEECCCEEEEECCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG
5523121303200231143200002311231221010310010012331202002123332212202120033023230000010022113200200200231131201000000012111011100311000000201110100341313320232312203322010101021100000020001001013300000000101102200100021003232222211133121322223012310220231023112213102200120112232323212232222232012004312100111101001111100010230312132002000112201031003002132001000100220000025
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG
1	MUSTER	2xdvA	0.121	0.930	1.873	threading_1	LNFISPIKTETFFKEFWEQKPLLIQRDDPAL-----ATYYGSLFKLTDLKSL-----CKDFDQK-------------RATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEE-RIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGSTHVTISTYQNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQESTTVATRRLSGFLRTLADRLEGTKELLSDMKKDFIMHRLPPYSAKLPRLDVVRLQFKDHIVLTVLPKMVYIYHNSRETHMMGRFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQVV-
2	SPARKS	2xdva	0.135	0.930	3.860	threading_2	FESLIPIKTETFFKEFWEQKPLLIQRDDPAL-----ATYYGSLFKLTDLKSLCKDFDQK------------------RATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVE-AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGSTHVTISTYQNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQESTTVATRRLSGFLRTLADRLEGTKELLDMKKDFIMHRLPPYSAKLPRLDSVVRLQFKDHIVLTVLPEKMVYIYSRETHMMGNRFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQVV-
3	PROSPECT2	2xdvA	0.130	0.930	3.752	threading_3	LNFDSPIKTETFFKEFWEQKPLLIQRDDPAL-----ATYYGSLFKLTDLKSLCKDFD------------------QKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTV-PLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLTHVTISTYQNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQESTTVATRRLSGFLRTLADRLEGTKELLSMKKDFIMHRLPPYSAKLPRLDSVVRLQFKDHIVLTVLPEKMVYIYRETHMMGNHGFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQV-V
4	PPA-I	2xdvA	0.133	0.930	2.929	threading_4	ESLISPIKTETFFKEFWEQKPLLIQRDDPAL-----ATYYGSLFKLTDLKSL-----CKDFDQ-------------KRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVE-AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLTHVTISTYQNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQESTTVATRRLSGFLRTLADRLEGTKELLSMKKDFIMHRLPPYSAKLPRLDSVVRLQFKDHIVLTVLPEKMVYIYHSLTHMMGNHFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQVV-
5	HHPRED-l	2xdv_A	0.130	0.866	5.895	threading_5	FESLIPIKTETFFKEFWEQKPLLIQRDDPYYGSLFKLTDLKSLC----------------------------KDFQKRATIQFHQPQRFKDELWRIQEKLECYFGSLV-GSNVYITPAGSGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVE-AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAHSTHVTISTQNNSWGDFLLDTISGLVEDVELRTGIPRQLLLQ-----ESTTVATRRLSGFLRTLADGTKESSDMKKDFIMHRLPPYSA-------------KLPRLDSVVRLKDHIVLTVLPKMVYHHGLRFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQVV-
6	HHPRED-g	1vrb_A	0.190	0.721	6.035	threading_6	LEIISPVT-SEFLEEYWPVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVV--------------EALEWYEKGAALEFDFTDLFIPQVRRWIEKLKALPAGTSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNP-QHYDLS--EDLPDAEIVNLTPGT-LYLPRGLWHSTKSDQATLALNITFGQPAWLDL-LAALRKKLISD---NRFRELAVNHQSLHESSKSELNGYLESLIQTLSE---NAETLTPEQIFQSQDS-----DFDPYQSTQLVFR----QLLT---------------------------------------------------------------------
7	SP3	2xdva	0.138	0.930	4.099	threading_7	FESLIPIKTETFFKEFWEQKPLLIQRDDPAL-----ATYYGSLFKLTDLKSLCKDFDQK------------------RATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEA-EERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGSTHVTISTYQNNWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQESTTVATRRLSGFLRTLADRLEGTKELLSMKKDFIMHRLPPYSAKLPRLDSVVRLQFKDHIVLTVLPEKMVYIYNSRETHHGLRFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQVV-
8	SAM-T99	2xdvA	0.143	0.901	5.861	threading_8	ESLISPIKTETFFKEFWEQKPLLIQRDDPAYGSLFKLTDLKSL---------------------------CKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVG--SNVYITPAGGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVE-AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAHSTHVTISTYQNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLSTTVATRRLSGFLRTLADRLEGTKELLSSDM-----KKDFIMHRLPPKLPRLDSVVRLQFKDHIVLTVLPEKMVYIYNSRETHHGLRFPLSHLDALKQIWNSPAISVKDL-KLTTDEEKESLVLSLWTECLIQVV-
9	MUSTER	1vrbD	0.151	0.748	1.600	threading_9	VSIISPVT-SEFLEEYWPVKPLVARGEVERFTSIPGLENVLAIYNNPVVVGDAVIEESDRFLVS---PAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRGTSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVDDLQSYWKGDPPKEDLPDAEIVNLTPGTLYLPRGLWHSTKSDQATLALNITFGQPAWLDLLAALRKKLISDN----RFRELAVNHQESSKSELNGYLESLIQTLSENAETPEQIFQS---------QDSDF----DPYQSTQLVFRQLLT-------------------------------------------------------------------------
10	SPARKS	1vrba	0.171	0.753	3.695	threading_10	LESIISPVTSEFLEEYWPVKPLVARGEVERFTSIPGFEKVRTLENVLAI-----YNNPVVVRFLVSPAEALEWY-EKGAALEFDFTDLFIPQVRRWIEKLKALPAGTSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPQHYDGDPPKEDLPDAEIVNLTPGT-LYLPRGLWHSTKSDQATLALNITFGQPAWLDLLAALRKKL----ISDNRFRELAVNHQSLHESSKSELNGYLESLIQTLSENAETLT---PEQIFQSQDSDF-----DPYQSTQLVFRQLLT-------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.583 to 1vrbD SCOP code=b.82.2.11	TM-score=0.577 to 1vrbD SCOP code=b.82.2.11	TM-score=0.596 to 1vrbD SCOP code=b.82.2.11	TM-score=0.585 to 1vrbD SCOP code=b.82.2.11	TM-score=0.570 to 1vrbD SCOP code=b.82.2.11