Template-based Modeling Results for YCCA_ECOLI

Submitted Primary Sequence

>Length 219
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
554222223332111101200220010000000000000000001110000000000000000001222223110000000000000000000010001112120000000000000000000001233311110000000000000000011002120010000000000000000000110132032100100010000000000000100122244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
1	SPARKS	2xwub	0.084	0.982	1.287	threading_1	KAQLFTQITRFASGKIVLTRLCVALASLALSMAVADMVRLFQAPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEV----PLQDCEALIQAAFAALFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS
2	PROSPECT2	2bkuB2	0.097	0.991	1.362	threading_2	ENQLTLEDAQSLQELQSNMLMGLFFRLLFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMPNARRELKPAVLSVFGDIASNIGADFIPYENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYS--EDATSRAAVGLIGDIAAMFDWVIDYIKRTRSG
3	SPARKS	2bkub	0.112	0.982	1.175	threading_3	FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPE--LMKIMVDNTGAEQPENVKRASLLALGYMCESASNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATIEVQAAAF--GCLCKIMSKYYTFMKPYMALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS
4	PROSPECT2	1r2fA	0.111	0.991	1.321	threading_4	ISDKDLEVWNRLTSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSWLPMYFSSRGKLTNTADLIDEAVHGYYIGYKYQIALLSAIEREELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFL--CYNANKALMNLGYEASP
5	SPARKS	3m1ic	0.105	1.000	1.165	threading_5	VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESL
6	PROSPECT2	1h0oa	0.119	1.000	1.267	threading_6	NPSVEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEVADRLMLELGFNKIE
7	SPARKS	2x1gf	0.083	0.991	1.156	threading_7	KQKILESIVRFAGGP--KIVLNRLCISLGAYIVHMLGEEVINTFQNQADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVKMFLDSLSEITKTEDIIVHIYMLFVSSVER
8	PROSPECT2	1ezfa	0.073	1.000	1.232	threading_8	NSLKTCYKYLNQTVEKKVPLLHNFHSFLQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYSVFNFCAIPQVMAIATLAACYNNQQVFMPAVKAIIYQYMEESSKTRQIISTRTQN
9	SPARKS	1ee4a	0.070	0.977	1.113	threading_9	LGNVAGDSTDYRDYVLQCNAMEPILGLFNPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHTLVQTPALRAVGNIVTGNDLQTQVVINAG----VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVADKTKKEACWAISNASSGGLQ
10	PROSPECT2	1pw4A2	0.097	0.890	1.224	threading_10	TAK----------QIFMQYVLPNKLLWYIAIANVFVYLLR--------------YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIIGLHALELAPKKAAGTAAGFTGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVEQLLQELVP

Predicted Tertiary Structure


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TM-score=0.597 to 2onjA SCOP code=c.37.1.12	TM-score=0.635 to 1b3uA SCOP code=a.118.1.2	TM-score=0.754 to 3ea5B SCOP code=a.118.1.1	TM-score=0.731 to 1qgkA SCOP code=a.118.1.1	TM-score=0.768 to 1uzrB SCOP code=a.25.1.2