Template-based Modeling Results for YCAD_ECOLI

Submitted Primary Sequence

>Length 382
MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV
5531110000000000010000000000000002224011110000000000000000000010032000110000000000000000000100100000000000000000000100012102231002000000001000000010000201232110000000000000000011222333234432121200121210100000000000010000000000022210212000000000000000010000100121121100100000000000000000000000000000000000000010122033210010010000000000000000000002100100000000000000000002212323332244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV
1	MUSTER	1pw4A	0.137	0.995	2.025	threading_1	RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-FNDWHAALYMPAFCAILVALFAFAIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQL
2	SPARKS	1pw4a	0.132	0.990	5.523	threading_2	YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWALYMPAFCAILVALFAFAPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATINPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIQELVP----
3	PROSPECT2	1pw4A	0.151	0.990	2.961	threading_3	YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNAALYMPAFCAILVALFAFAMGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATINPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVQLLQELVP----
4	PPA-I	1pw4A	0.134	1.000	2.576	threading_4	YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVNRGATGVFFMTLVTIATIVYWNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQL
5	HHPRED-l	3o7q_A	0.135	0.971	6.126	threading_5	-RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNSVQTPYMIIVAIVLLVALLLTKFPALQSDNHKQASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI-VMTIIGGGIVTPVMGFVSDAGNIPTAELIPALCFAVIFIFARFRSQT--------
6	HHPRED-g	3o7q_A	0.132	0.969	5.151	threading_6	-RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNSVQTPYMIIVAIVVALLIMLTKFPALQSDNHSQGSLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI-VMTIIGGGIVTPVMGFVSDAGNIPTAELIPALCFAVIFIFARFRSQT--------
7	SP3	2gfpa	0.149	0.950	4.693	threading_7	------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEALMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLCWL--------PL---
8	SAM-T99	1pw4A	0.137	0.992	3.814	threading_8	-PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND-WHAALYMAFCAILVALFAFAMMRDTPQSKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDRGNRGATGVFFMTLVTIATIPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVKRRHEQLLQE-
9	MUSTER	2gfpA	0.142	0.940	1.906	threading_9	------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTWQSVICCLLAWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLC---------------
10	SPARKS	2gfpa	0.146	0.950	4.923	threading_10	------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEALMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLCWLPL-----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.911 to 1pw4A SCOP code=f.38.1.1	TM-score=0.904 to 1pw4A SCOP code=f.38.1.1	TM-score=0.889 to 1pw4A SCOP code=f.38.1.1	TM-score=0.879 to 1pw4A SCOP code=f.38.1.1	TM-score=0.883 to 1pw4A SCOP code=f.38.1.1