Template-based Modeling Results for YBJP_ECOLI

Submitted Primary Sequence

>Length 171
MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHEEEEEECCCEEEEEEEEECCCCCCCCCCCHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR
563332110000000010012122113321221110131012200320120102341310210122003300110120143234331122211113221110020211121334223101010102223311211000012120000000100111110220213221244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNVAQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDSAHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHATAGTLRQSIENR
1	HHPRED-l	3k7c_A	0.095	0.556	1.072	threading_1	--------------------------------------SNPEDLAKNFTKDLYSGDTKSV-IDLSFVSDKITQVVAENAAKAKR-------------GGVKDIQIEEKTINKDSAKIRVLVL---FNNDNNQSSNVFLAKKDRKWLVLLK---------------------
2	HHPRED-g	3k7c_A	0.135	0.561	1.451	threading_2	--------------------------------------SNPEDLAKNFTKDLYSGDTKSVSIDLSEASDEEKTFVAENAAK------------AKR-GGVKDIQIEEKTIN--KDSAKIRVLVL-FNNDNNQSSNVFLAKKDRKWLVLLK---------------------
3	HHPRED-g	2qgu_A	0.087	0.743	1.278	threading_3	--------------------------------------ADAQATVKTAVDDVIKGDGGNLQKVVPRADPEQQQQIQDGFKSLLIRTY--AGAL-ANVRN-QTVAYKPFRAAADDTDVVVRSTVNN--NGEPVALDYRVEKSPNGWKVYDINISGLWLSETKNQFADVISKG
4	MUSTER	1f1hL	0.211	0.860	0.670	threading_4	----------SAEHVLTMLHEVK-RFTDKGK-----VTIPAHQVNAEFFEEGKMFDGSSIGGWKG-INESDMVLMPDAS-------TAVIDPFFADSTLIIRCDILEPGTLQDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASIIEGAWNSSTKYEGGN
5	SPARKS	3qk9a	0.086	0.889	0.716	threading_5	LKNKLWDESNPLIVVMRKITNSSRVYSQFKFSNESFTRHLREYIVPEILEAYV---KGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVY----ADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLMSSYAMVFTRDPEGWKILEFVRGGSRQFT------------
6	PROSPECT2	1ycdA	0.099	1.000	0.914	threading_6	VQIPKSEKSSGIRKLLKKANVQADVNRAWFYHSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKYSFTEPDPEHPGELRITEKFRDSFAVKPDMKTKMIFIYGAKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNKKDIIRPIVEQ
7	PPA-I	1yiqA2	0.062	0.567	0.737	threading_7	LSNDTASIEAGAKLYDGYCSQCHGIHAVSGGVLPDLRKLTPEKHQMFLGILFGGRVPDGMPSFADAFTPEQVDQIHQYLIKRAHDLHQEGDTWKQFS--------------------------------------------------------------------------
8	HHPRED-l	2qgu_A	0.065	0.719	0.615	threading_8	--------------------------------------ADAQATVKTAVDDVLAGDGGNLQKVVPRADFRTTQIA-GRF--WSQATPEQQQQIQDNVRN-QTVAYKPFRAAADDTDVVVRSTVNN--NGEPVALDYRVEKSPNGWKVYDINISGLWLSE---TYKNVISK-
9	HHPRED-g	3qk9_A	0.094	0.749	0.900	threading_9	LKNKL------SSRVYSQFK-----FS-------------NESFLREIVPEILAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEDVYADGRI-----LDIRGVEIVSAKLLAPQPVLVVGCRAQEITGDLMSSYAMVFTRD--GWKILEFVRGGSRQFT------------
10	SP3	1g2ia	0.197	0.860	0.420	threading_10	NEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHVDLTFDKVNPEEFDALVLPGGRAPERVRL--NEKAVSIARKFSE---------GKPVASICHGP--QILISAGVLRGRKGTSYPIKDDINAGVE-WVDAE--------VVVDNWVSSRVPADLYAREFVKLLK--

Predicted Tertiary Structure


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TM-score=0.506 to 3d9rB SCOP code=d.17.4.27	TM-score=0.531 to 2f86B SCOP code=d.17.4.7	TM-score=0.521 to 3d9rB SCOP code=d.17.4.27	TM-score=0.671 to 1f1hL SCOP code=d.15.9.1	TM-score=0.846 to 1ka1A SCOP code=e.7.1.1