Template-based Modeling Results for YBJI_ECOLI

Submitted Primary Sequence

>Length 271
MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ
CCCEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCEEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCCEEECCHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEECCCHHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ
4511000000110002332201331012002203322020000011112201200330223000001100000121110021302330002002101333301000002310001332331021003212240210220331332000000012331022003102421242010010020001001320111200210032120331000000101000200210000001310121001003220211132000200020033213244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ
1	MUSTER	3l7yA	0.379	0.974	3.162	threading_1	-SVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEKPQAVIALSGEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPERFFKLTLQVKEEESAQIMKAIADKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYLAS------
2	SPARKS	3l7ya	0.379	0.974	4.458	threading_2	-SVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEKPQAVIALSGEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPERFFKLTLQVKEEESAQIMKAIADKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYLAS------
3	PROSPECT2	3l7yA	0.379	0.974	4.463	threading_3	-SVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEYPQAVIALSGEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPERFFKLTLQVKEEESAQIMKAIADKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYLA------S
4	PPA-I	3l7yA	0.379	0.974	4.478	threading_4	-SVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEKPQAVIALSGEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPERFFKLTLQVKEEESAQIMKAIADKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYLAS------
5	HHPRED-l	1rlm_A	0.509	0.993	2.891	threading_5	-AVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPFN-
6	HHPRED-g	1rlm_A	0.509	0.993	2.483	threading_6	-AVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPFN-
7	SP3	3l7ya	0.375	0.974	4.494	threading_7	-SVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEKYPQAVIALSEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPERFFKLTLQVKEEESAQIMKAIAYKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYLAS------
8	SAM-T99	3l7yA	0.382	0.967	3.621	threading_8	-SVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEYPQAVIALSGEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPERFFKLTLQVKEEESAQIMKAIADKTSQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYL--------
9	MUSTER	2hf2B	0.483	0.970	3.057	threading_9	LSVKVIVTD-DGTFLNDAKTYNQPRF-AQYQELKKRGIKFVVASNNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALAK-HYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDG-IKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAELKARY---SFAGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFN-
10	SPARKS	3niwa	0.238	0.945	4.035	threading_10	-KYKLIVLDLDGTLTNSKKEIS-SRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRNEGFILSYNGGEIINWESKEYENVLPNEVVPVLYECARTN-HLSILTYDGAEIVTENSLDPYVQKEAFLNKAIRETNDFLTDITLPVAKCLIVGDAGKLIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGT-REEVIAIGDGYNDLSIKFAGGV---AGNAQEPVKKAADYITLTNDEDGVAEAIERIF--------

Predicted Tertiary Structure


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TM-score=0.873 to 1rkqA SCOP code=c.108.1.10	TM-score=0.871 to 1rkqA SCOP code=c.108.1.10	TM-score=0.873 to 1rkqA SCOP code=c.108.1.10	TM-score=0.872 to 1rkqA SCOP code=c.108.1.10	TM-score=0.873 to 1rkqA SCOP code=c.108.1.10