Template-based Modeling Results for YBHD_ECOLI

Submitted Primary Sequence

>Length 317
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCEEECHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
55121100200000032110110042021110211310340042141200212212010030022002102300320230021023033222010000000000110002000201430140201002201320020012230000000022243201000002130000014301003332030320132200002220001100120033232312100102212001000211100000000003213221000020231212110000112322102002200200120022223212321233343223324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
1	MUSTER	3fxrA	0.223	0.921	2.958	threading_1	M-LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDTDLEAQPLYVSDVVIVGQRQHPMANAT--RLAELQECRWAFSSAPRGPGAIIRNAFARYGLPPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFKQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL----------------------
2	SPARKS	1iz1a	0.214	0.915	5.016	threading_2	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVA-AIRWPDIAFARIVGTRVKVPISCIFRKEK-QPPILARFVEHVRRSA-----------------------
3	PROSPECT2	1iz1a	0.217	0.915	4.815	threading_3	M--EFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAA-IRWPDIAFARIVGTRVKVPISCIFRKEKQ-PPILARFVEHVRRS-----------------------A
4	PPA-I	1iz1B	0.216	0.921	5.583	threading_4	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVP-ASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQ-PPILARFVEHVRRSAKD---------------------
5	HHPRED-l	1al3_A	0.189	0.716	3.514	threading_5	---------------------------------------------------------------------------------------TWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTR--DVVDTAVALRSIEAMPEK-
6	HHPRED-g	1al3_A	0.174	0.726	2.963	threading_6	---------------------------------------------------------------------------------------TWPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEAHLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVTAVALRSNEDIEAMFKDI
7	SP3	3fxra	0.223	0.921	5.519	threading_7	M-LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKIDTDLEAQPLYVSDVVIVGQRQHPMANA--TRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL----------------------
8	SAM-T99	1iz1B	0.216	0.921	3.539	threading_8	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAA-IRWPDIAFARIVGTRVKVPISCIFRKE-KQPPILARFVEHVRRSAKD---------------------
9	MUSTER	1iz1B	0.216	0.921	2.950	threading_9	--MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAAI-RWPDIAFARIVGTRVKVPISCIFRKEKQ-PPILARFVEHVRRSAKD---------------------
10	SPARKS	3fxra	0.223	0.921	4.954	threading_10	M-LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWEGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDTDLEAQPLYVSDVVIVGQRQHPMANAT--RLAELQECRWAFSSAPRGPGAIIRNAFARYGLPPKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL----------------------

Predicted Tertiary Structure


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TM-score=0.665 to 2esnC SCOP code=a.4.5.37	TM-score=0.892 to 1iz1B SCOP code=a.4.5.37	TM-score=0.804 to 1iz1B SCOP code=a.4.5.37	TM-score=0.800 to 1iz1B SCOP code=a.4.5.37	TM-score=0.826 to 1iz1B SCOP code=a.4.5.37