Template-based Modeling Results for YBEF_ECOLI

Submitted Primary Sequence

>Length 317
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHKGIVNAAKVLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSLRDPILHGVIDVIRNAF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHKGIVNAAKVLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSLRDPILHGVIDVIRNAF
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHKGIVNAAKVLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSLRDPILHGVIDVIRNAF
55432323211244123222211110220000001001001322001200421311100002002200311312000110311210210120032013002102200233232232100000002000000001003002231140101002222022102323000001012222420211100222000001220121223021210031200000023321210221033122311000101100000000230100000011002100411301102002141440100000051122020020012003311
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHKGIVNAAKVLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSLRDPILHGVIDVIRNAF
1	MUSTER	2esnC	0.216	0.918	3.324	threading_1	----------------------HPLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPGRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAELSVEALASGRIDFALGY-DRLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAP-FDIPPYVLRLYSHV--QHRDAHAWMIGQLKGLD
2	SPARKS	2esna	0.220	0.918	6.014	threading_2	-----------------------PLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAELSVEALASGRIDFALGYDERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAP-FDIPPYVLRLYSHV--QGRDAHAWMIGQLKGLD
3	PROSPECT2	2esnA	0.220	0.918	4.736	threading_3	-----------------------PLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAELSVEALASGRIDFALGYDERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAP-FDIPPYVLRLYSHV--QGRDAHAWMIGQLKGLD
4	PPA-I	2esnC	0.216	0.918	7.386	threading_4	----------------------HPLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPGRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAELSVEALASGRIDFALGY-DRLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAP-FDIPPYVLRLYSHV--QHRDAHAWMIGQLKGLD
5	HHPRED-l	1uth_A	0.150	0.653	3.615	threading_5	------------------------------------------------------------------------------------------------------------TRNSFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHP-AKLPDIAINLFWHAKYNRDPGNMWLRQLFVEL-
6	HHPRED-g	1uth_A	0.159	0.656	3.674	threading_6	------------------------------------------------------------------------------------------------------------TRNSFDPTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHP-AKLPDIAINLFWHAKYNRDPGNMWLRQLFVELF
7	SP3	2esna	0.220	0.918	6.021	threading_7	-----------------------PLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAKLSVEALASGRIDFALGYDERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAP-FDIPPYVLRLYSHV--QGRDAHAWMIGQLKGLD
8	SAM-T99	2esnC	0.223	0.905	6.242	threading_8	-------------------------LRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAEKLVEALASGRIDFALG-YDRLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAGLALYPAPF-DIPPYVLRLYSHVQHRD--AHAWMIGQLKGL-
9	MUSTER	1utbB	0.164	0.691	2.239	threading_9	-------------------------------------------------------------------------------------------------YALNTLQTALTTRDSFDPTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNNLSEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPERFAVRCEVPFGLTTSPHP-AKLPDIAINLFWHAKYNRDPGNMWLRQLFVELF
10	SPARKS	3fxra	0.167	0.909	3.981	threading_10	---------------------------MLKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWHITFAASPAIALAALPLALASFAREFPDVTVNVRMYPAVSPQLRDGTLDFALTAAHDIDTDLEAQPLYVSDVVIVGQRQHPMANAT-RLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEKLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFKDQLCSIPLQD-ALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHA

Predicted Tertiary Structure


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TM-score=0.939 to 2esnC SCOP code=a.4.5.37	TM-score=0.909 to 2esnC SCOP code=a.4.5.37	TM-score=0.787 to 2esnC SCOP code=a.4.5.37	TM-score=0.787 to 2esnC SCOP code=a.4.5.37	TM-score=0.939 to 2esnC SCOP code=a.4.5.37