Template-based Modeling Results for YBCL_ECOLI

Submitted Primary Sequence

>Length 183
MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
CHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
312100000000000013212020103304223301221122121031131101011220242020000001112112101000000000111122122322443223122101203111121101000014133110000100004233130323011210020022110010101011225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
1	MUSTER	1fuxA	0.994	0.885	3.741	threading_1	--------------------EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGY-LNANKIATAEITPVYEIK
2	SPARKS	1fjja	0.519	0.842	5.375	threading_2	---------------------AKLISNDLRDGDKLPHRHVFNG-GYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGS--GLVAPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALDIERIDVDEGASGA-VGFNVHFHSLASASITAFS---
3	PROSPECT2	1fuxA	0.957	0.885	3.102	threading_3	--------------------EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSS-GALVGYLNANKIATAEITPVYEIK
4	PPA-I	1fuxA	0.957	0.885	4.465	threading_4	--------------------EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSS-GALVGYLNANKIATAEITPVYEIK
5	HHPRED-l	1fux_A	0.994	0.880	7.050	threading_5	--------------------EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGY-LNANKIATAEITPVYEI-
6	HHPRED-g	1fux_A	0.994	0.885	6.249	threading_6	--------------------EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGY-LNANKIATAEITPVYEIK
7	SP3	1fjja	0.513	0.842	5.253	threading_7	---------------------AKLISNDLRDGDKLPHRHVFNG-GYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGL--VAPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALDIERIDVDEGASGA-VGFNVHFHSLASASITAFS---
8	SAM-T99	1fuxA	0.975	0.885	5.916	threading_8	--------------------EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYLNA-NKIATAEITPVYEIK
9	MUSTER	1vi3A	0.513	0.852	3.564	threading_9	--------------------SLKLISNDLRDGDKLPHRHVFNG-GYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGL--VAPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALDIERIDVDEGASGA-VGFNVHFHSLASASITAFSE--
10	SPARKS	3n08a	0.347	0.803	5.148	threading_10	-------------------NAMQLTSQAFSYGRPIPKKY-----SCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPDGLWIHWIVYNLSPVVSNLAEGA--------QIFAVQGLNTAGEIGYCPPCPP--DAKHRYYFYAYALDVV-LSDEEGVTKEQLLEAMDGHIIATAELMGTYEK-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.935 to 1fuxA TM-score=0.992 to native SCOP code=b.17.1.2	TM-score=0.934 to 1fuxA TM-score=0.991 to native SCOP code=b.17.1.2	TM-score=0.909 to 1vi3A TM-score=0.942 to native SCOP code=b.17.1.2	TM-score=0.934 to 1fuxA TM-score=0.991 to native SCOP code=b.17.1.2	TM-score=0.934 to 1fuxA TM-score=0.991 to native SCOP code=b.17.1.2

Experimental Structure

Download 1fuxB

SCOP code=b.17.1.2