Template-based Modeling Results for YBBO_ECOLI

Submitted Primary Sequence

>Length 269
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
CCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
55332122122312310000000010001100100443102000001423102303321020010112123102300220032132100000000000000002202311022000010100010012001101422301000000010111110100100010002000200111033110200001011140301210132233322311110232222031002101200213212010002110100000120002300121134
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG
1	MUSTER	1fduC	0.300	0.941	2.208	threading_1	-------------ARTVVLITGCSSGIGLHLAVRLASQSFKVYATLRDLKTQGRLWEASLETLQLDVRDSKSVAAARERV---TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRE
2	SPARKS	3m1aa	0.276	0.929	2.252	threading_2	-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVADRAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTPGDPAKAAAAIRLALDTEKTPLRLALG--GDAVDFLTGH--LDSVRAELTE
3	PROSPECT2	3klpX	0.292	0.941	3.459	threading_3	-------------ARTVVLITGCSSGIGLHLAVRLASQSFKVYATLRDLKTQGRLWEGSLETLQLDVRDSKSVAAARERV---TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHSPEEVLDFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRG
4	PPA-I	3m1aA	0.260	0.944	2.241	threading_4	-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAARAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENVGPTRQLVQGPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAELTEWEKV
5	HHPRED-l	2bd0_A	0.225	0.825	1.385	threading_5	--------------KHILLITGAGKGIGRAIALEFARAARHLVLSSRTAADLEKISAELTDTITADISDMADVRRLTTHIVERY-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEM-----------QALMMMPEDIAAPVVQAYLQPSRTVVLPTSGDI---------------------
6	HHPRED-g	1jtv_A	0.293	0.914	1.322	threading_6	-------------ARTVVLITGCSSGIGLHLAVRLASDPSQVYATLRDLKTQGRLWCGSLETLQLDVRDSKSVAAARERVT---EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT-------GSPEEVLDRSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRG
7	SP3	3m1aa	0.264	0.944	2.297	threading_7	-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVADRAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSELTEWEKVSRG
8	SAM-T99	1fduC	0.292	0.941	1.819	threading_8	-------------ARTVVLITGCSSGIGLHLAVRLASQSFKVYATLRDLKTQGRLWEASLETLQLDVRDSKSVAAARERVT---EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEHTFHRFYQYLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSGSNYVTAMH
9	MUSTER	3m1aA	0.269	0.941	2.154	threading_9	-------------SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAARAEAISLDVTDGERIDVVAADVLARYG-RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLP-QRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENVGPTRQLVQGPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDS-LTEWEKVSRG
10	SPARKS	1fds_	0.289	0.941	2.063	threading_10	-------------ARTVVLITGCSSGIGLHLAVRLASDPFKVYATLRDLKTQGRLWEASLETLQLDVRDSKSVAAARERVTE---GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTVLGSPEEVLDRTDIAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSNYVTAMHRG

Predicted Tertiary Structure


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TM-score=0.902 to 1fduC SCOP code=c.2.1.2	TM-score=0.855 to 1fduC SCOP code=c.2.1.2	TM-score=0.801 to 2ag5A SCOP code=c.2.1.2	TM-score=0.845 to 1fduC SCOP code=c.2.1.2	TM-score=0.807 to 1ae1B SCOP code=c.2.1.2