Template-based Modeling Results for YAGV_ECOLI

Submitted Primary Sequence

>Length 236
MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRIAISAIDSPGSSELRTRPVDGELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFREVPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRIAISAIDSPGSSELRTRPVDGELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFREVPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD
CCHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCEEEEEEEECCCEEEEEEEEEEEECCCCCCCEECCCCCCCEEECCCEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCHHHCCCCCEEEEEEEEEEEEEEECCCCCCCCEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCCEEEEECCEEEECCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRIAISAIDSPGSSELRTRPVDGELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFREVPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD
53332011011000000000000001000011000002342320012011333221001000010223333222232232100000200003122211010012135443220000001301243323322322210010000000000011432312010122202021111010100012114334320200001121202133143422100011110020132022323338
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFVSKRVVNNNKSARIYRIAISAIDSPGSSELRTRPVDGELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFREVPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWSFDKVTGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYNDKFIKISDSCPAKPPSAD
1	MUSTER	2co6B	0.157	0.809	1.548	threading_1	------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKA--ADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTGGPTDRETLQWVCIKAVPPENEPGATLD-----LNLSINACDKLIFRPDAGNLRWVETGNKLKVENPTPFYMNLASVTV--GGKPITGLEYVPPFADKTLNMPGSHGDEWRVITD----------GESHPFH
2	SPARKS	2co6b	0.143	0.831	3.518	threading_2	------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKA----ADKS-----SPAPFLVMPPLFRLEANQQSQLRIVRTGGPTDRETLQWVCIKAVPPENEPGATLD-----LNLSINACDKLIFRPDAGNLRWVETGNKLKVENPTPFYMNLASVTV--GGKPITGLEYVPPFADKTLNMPGSHGDIEWRVIT-----DFGGESHPFHYV
3	PROSPECT2	2co6B	0.152	0.835	1.637	threading_3	LN------------------SATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADKSS---------PAPFLVMPPLFRLEANQQSQLRIVRTGGDTDRETLQWVCIKAVPPENEPGATLDLNLS-----INACDKLIFRPDAVKGTWVETGNKLKVENPTPFYMNLASVTV--GGKPITGLEYVPPFADKTLNMPGSHGDIEW----RVITDFGGESHPFHYVL
4	PPA-I	1p5uA	0.120	0.809	2.995	threading_4	----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD------------ENKEPFVVTPPLFRLDAKQQNSLRIAQAGGPRDKESLKWLCVKGIPPKDP----DKDVGVFVQFAINNCIKLLVRPNEENLSWKVDGGKLIAENPSPFYMNIGEL---TFGGKSIPSHYIPPKSTWAFDLPKGLAG----ARNVSWRIINDQGGLDRLYS
5	HHPRED-l	1p5v_A	0.148	0.746	4.731	threading_5	--------------------FASKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD----------------PFVVTPPLFRLDAKQQNSLRIAQAGGPRDKESLKWLCVKGIP---------KDVGVFVQFAINNCIKLLVRPNELNLSWKVDGGKLIAENPSPFYMNIGELTFGG---KSIPSHYIPPKSTWAFDLP-----SWRIINDQ-GGLDRSKNV------
6	HHPRED-g	2co7_B	0.152	0.780	4.894	threading_6	---------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQ----SSVKAADKS-----SPAPFLVMPPLFRLEANQQSQLRIVRTGMPTDRETLQWVCIKAVPPE----------TLDLNLSINACDKLIFRPDAVNLRWVETGNKLKVENPTPFYMNLASVTV--GGKPITGLEYVPPFADKTLN----HGDIEWRVITDFGGESHHYVL------
7	SP3	2co6b	0.163	0.831	3.044	threading_7	------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADKS---------SPAPFLVMPPLFRLEANQQSQLRIVRTGGPTDRETLQWVCIKAVPPENE-----PGATLDLNLSINACDKLIFRPDAGNLRWVETGNKLKVENPTPFYMNLASVT--VGGKPITGLEYVPPFADKTLNMPGSHGDIEWRVITDFGGES-----HPFHYV
8	SAM-T99	3gfuA1	0.121	0.492	0.995	threading_8	--------------------------SLAVDQTRYIFRGDKDALTITVTNNDKERTFGGQAWVD-------NIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASLPKDKESVYWLNLQDIPPALEGS--------GIAVALRTKLKLFYRPKALLE-------------------------------------------------------------------------------
9	MUSTER	1p5uA	0.127	0.801	1.541	threading_9	----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD------------ENKEPFVVTPPLFRLDAKQQNSLRIAQAGGPRDKESLKWLCVKGIPPKDPDKDVGVF----VQFAINNCIKLLVRPNEENLSWKVDGGKLIAENPSPFYMNIGELTF---GGKSIPSHYIPPKSTWAFDLPKGLAGSWRIIND------QGGLDRLYSKN
10	SPARKS	1p5ua	0.138	0.801	3.324	threading_10	----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD------------ENKEPFVVTPPLFRLDAKQQNSLRIAQAGGPRDKESLKWLCVKGIPPKDPDKDVGVFVQFA----INNCIKLLVRPNEENLSWKVDGGKLIAENPSPFYMNIGEL---TFGGKSIPSHYIPPKSTWAFDGLAGARNVSWRI------INDQGGLDRLSKN

Predicted Tertiary Structure


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TM-score=0.775 to 2co6B SCOP code=b.1.11.1	TM-score=0.773 to 2co6B SCOP code=b.1.11.1	TM-score=0.770 to 2co6B SCOP code=b.1.11.1	TM-score=0.699 to 2co6B SCOP code=b.1.11.1	TM-score=0.728 to 2co6B SCOP code=b.1.11.1