Template-based Modeling Results for SKP_ECOLI

Submitted Primary Sequence

>Length 161
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
CHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
42200100000000000021222000000010032023212113202321321132024023202311431342322322230231022123212310320243223212321130032022003200432401000022000012132320122014315
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
1	MUSTER	1u2mC	0.818	0.851	1.994	threading_1	-------------------GADKIAIVN-GSLFQQVAQKTGVSNTLENEFKGRASELQRETDLQAKK----KLQSKAGSDRTKLEKDVAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
2	SPARKS	1sg2a	1.000	0.876	3.900	threading_2	--------------------ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
3	PROSPECT2	1sg2A	1.000	0.876	2.196	threading_3	--------------------ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
4	PPA-I	1u2mC	0.818	0.851	3.187	threading_4	-------------------GADKIAIVN-GSLFQQVAQKTGVSNTLENEFKGRASELQRETDLQAKK----KLQSKAGSDRTKLEKDVAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
5	HHPRED-l	1u2m_A	1.000	0.509	6.625	threading_5	--------------------ADKIAIVN-GSLFQQVAQKTGVSNTLE---------------------------------------------------------RARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV-
6	HHPRED-g	1u2m_A	1.000	0.516	6.397	threading_6	--------------------ADKIAIVN-GSLFQQVAQKTGVSNTLE---------------------------------------------------------RARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
7	SP3	1sg2a	1.000	0.876	4.290	threading_7	--------------------ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
8	SAM-T99	1u2mC	0.903	0.832	3.260	threading_8	--------------------ADKIAIVN-GSLFQQVAQKTGVSNTLENEFKGRASELQRETDLQAKKQSKAG-----SDRTKLEKDVAQ-RQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
9	MUSTER	2eh3A	0.115	0.919	0.774	threading_9	TKERILEVSKELFFEKVEEIVKRANL-SKEELITEIRTHKKIISLFEENKEKTPEELLEFLEVLYREKKVVYIFLFDLL--CSEKFRNIYFEKIEDAKRRFEKFLEKHFPSKAEILSEIILGFLRQLILH----YVIKE------ERELPFLKEKLREGLK
10	SPARKS	1u2ma	0.714	0.522	1.360	threading_10	-----------------------------------------------------------------------GADKIAIVNGSLFQQVAQK-TGVSNTL-----ERARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK

Predicted Tertiary Structure


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TM-score=0.759 to 1u2mC TM-score=0.702 to native SCOP code=f.48.1.1	TM-score=0.759 to 1u2mC TM-score=0.702 to native SCOP code=f.48.1.1	TM-score=0.620 to 1u2mC TM-score=0.740 to native SCOP code=f.48.1.1	TM-score=0.620 to 1u2mC TM-score=0.740 to native SCOP code=f.48.1.1	TM-score=0.759 to 1u2mC TM-score=0.702 to native SCOP code=f.48.1.1

Experimental Structure

Download 1sg2C

SCOP code=f.48.1.1