Template-based Modeling Results for SECD_ECOLI

Submitted Primary Sequence

>Length 615
MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHCHHHHEEEECCCCCCCHHHHHHCCCCCCCHHCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI
441311111100000000000011012111321100011232222233002201400342412121021221100010222211130120012100120000121131013002203222030101031000000101032001200321032012203432132221222242101010222311320121013222302011322120101023221231122103211210221034121211212222232000201223322201310112110201222231231002213222323122233122000223000203212302122333210100010122002000200121023210100011222244323120000113100110102230232120102222310220020022121212021012210122002210220110000000000000000111000000000000000000000002102010100000000000001110000120221033232022001200200000000010000000000000011102000000000000100000000100010012133244234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI
1	MUSTER	3aqpA	0.376	0.691	1.641	threading_1	---------------------------------------------------------------------------------DRKNLTSLFLLGVF----LLALL-----FVWKPWAPEEPVRLGLDLKGGLRIVLEADVE--------------------------------------------------------------------------------NPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLA-------------------IVLDGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYGHLGLVASLGLLYTSALILGLLSGL-GATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMW
2	SPARKS	3aqpa	0.358	0.691	7.923	threading_2	-------------------------------------------------------------------------------------DRKNLTSLFLLGVFLLALL-----FVWKPWAPEEPVRLGLDLKGGLRIVLEAD--------------------------------------------------------------------------------VENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNRDLIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL-------------------DGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYPHLGLVASLGLLYTSALILGLLSGL-GATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMW
3	PROSPECT2	3aqpA	0.362	0.693	3.325	threading_3	--DRKNLTSLFLLGVFLLALLFVWKPWAP--------------------------------------------------------EEPK-------------------------------VRLGLDLKGGLRIVLEAD--------------------------------------------------------------------------------VENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNREEIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL-------------------DGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYGHLGLVASLGLLYTSALILGLLSGL-GATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMW
4	PPA-I	3aqpA	0.360	0.691	3.573	threading_4	------------------------------------------------------------------------------------------DRKNLTSLFLLGVFLLALLFVWKPWAPEEPVRLGLDLKGGLRIVLEAD--------------------------------------------------------------------------------VENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNRELIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLA-------------------IVLDGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYPHLGLVASLGLLYTSALILGLLSGL-GATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMW
5	HHPRED-l	3aqp_A	0.355	0.691	10.941	threading_5	--DRKN-LTSLFLLGVFLLALLFVWKPWAP-------------------------------------------------------------------------------E-------EPKVRLGLDLKGGLRIVLEADVENP--------------------------------------------------------------------------------TLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQRENPRLNREKDLIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIV-------------------LDGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYPHLGLVASLGLLYTSALILGLLSGL-GATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPM-
6	HHPRED-g	3aqp_A	0.369	0.691	9.459	threading_6	--DRKNLTS-LFLLGVFLLALLFVWKPWAPE--------------------------------------------------------------------------------------EPKVRLGLDLKGGLRIVLEADVE--------------------------------NP----------------------------------------T--------LDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQENPRLNREELEKDLIKP-EDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL----D---------------GRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYPHLGLVASLGLLYTSALILGLLSGL-GATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMW
7	SP3	3aqpa	0.362	0.691	8.841	threading_7	-------------------------------------------------------------------------------------DRKNLTSLFLLGVFLLALL-----FVWKPWAPEEPVRLGLDLKGGLRIVLEAD--------------------------------------------------------------------------------VENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL-------------------DGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYPHLGLVASLGLLYTSALILGLLSGLG-ATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMW
8	SAM-T99	3aqpA	0.373	0.654	9.691	threading_8	----------LFLLGVFLLALLFVWKPWAPEEP--------------------------------------------------------------------------------------KVRLGLDLKGGLRIVLEADVENPTLDD--------------------------------------------------------------------------------LEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVNPRLNREELEKDLIKPEDLG-------------PPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL-------------------DGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIAYYGPHLGLVASLGLLYTSALILGLLSG-LGATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIR----
9	MUSTER	3aqpA2	0.171	0.771	1.176	threading_9	--------------------------------------------------------------------------------DRKNLTSLFLLGVFLL----ALLFVWKPW-----APEEPKVRLGLDLKGGLRIVLEADVENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPSQADQDRALKLIGQRAKVAEIRAIGPT-IFLLIFGPHLGLVASLGLLYTSALILGLLSGLGAT-PGI---G-ERIKEELRAGKKLRQAIPEG-ATGPVRFRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTAATLLLAGFNY-----SIDFTGGTAYTLRAEPN-------VEVETLRRFL---------EEKGFPGKEAVITQVYREFLV-KLPPL-----------SDERRLELERLFAS---ELKATVLASETVGPAIGEELRRNAVMAVLVGLGLILLYVAFRFDTFGVASILAVAHDVAIVAGMYSLL-GLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNR--------
10	SPARKS	3aqoa	0.315	0.346	4.384	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLRIVL-EADVENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSDQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNKDLIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVL-------------------DGRVYTAPVIRQAIGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.431 to 2c5sA SCOP code=c.26.2.6	TM-score=0.405 to 2ggpA SCOP code=d.58.17.1	TM-score=0.418 to 2c5sA SCOP code=c.26.2.6	TM-score=0.426 to 2ggpA SCOP code=d.58.17.1	TM-score=0.422 to 2c5sA SCOP code=c.26.2.6