Template-based Modeling Results for DHSB_ECOLI

Submitted Primary Sequence

>Length 238
MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
CEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEHHHCCCCEEEEEECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
2201010111233344211012020202415311001001103333320102110231100010000124111111010011222222010100211300100001012001101303110222232222232232331132010011001000001002112213331100000000021112233231211021113221002021021012102320301200010221124335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
1	MUSTER	2wdqB	1.000	1.000	4.370	threading_1	MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
2	SPARKS	1nekb	1.000	1.000	6.238	threading_2	MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
3	PROSPECT2	3abvB	0.545	0.987	6.020	threading_3	RIKKFAIYRWDPDKGDKPHMQTYEIDLNNC-GPMVLDALIKIKEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDT--NLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKE
4	PPA-I	2wdqB	1.000	1.000	5.222	threading_4	MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
5	HHPRED-l	1kf6_B	0.377	0.971	5.979	threading_5	MKLKIEVVRYNPEVDTAPHSAFYEVPYD--ATTSLLDALGYIKDLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDY---TDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDF-
6	HHPRED-g	1kf6_B	0.371	0.975	5.943	threading_6	KNLKIEVVRYNPEVDTAPHSAFYEVPYDA--TTSLLDALGYIKNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYT---DGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFL
7	SP3	1nekb	1.000	1.000	6.029	threading_7	MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
8	SAM-T99	2wdqB	1.000	1.000	6.332	threading_8	MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
9	MUSTER	1yq3B	0.534	0.983	3.894	threading_9	RIKKFSIYRWDPDKGDKPRMQTYEVDLNKCG-PMVLDALIKIKNE-STLTFRRSCREGICGSCAMNIAGGNTLACTKKIDP--DLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKE
10	SPARKS	1kf6b	0.371	0.975	5.922	threading_10	KNLKIEVVRYNPEVDTAPHSAFYEVPYDAT--TSLLDALGYIKDLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG---MKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFL

Predicted Tertiary Structure


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TM-score=0.911 to 2b76B TM-score=0.994 to native SCOP code=a.1.2.1	TM-score=0.911 to 2b76B TM-score=0.994 to native SCOP code=a.1.2.1	TM-score=0.912 to 2b76B TM-score=0.996 to native SCOP code=a.1.2.1	TM-score=0.901 to 2b76B TM-score=0.942 to native SCOP code=a.1.2.1	TM-score=0.911 to 2b76B TM-score=0.994 to native SCOP code=a.1.2.1

Experimental Structure

Download 1nekB

SCOP code=a.1.2.1