Template-based Modeling Results for RUMB_ECOLI

Submitted Primary Sequence

>Length 375
MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ
CCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ
540211221303002111121231121112102200130233310210112322010102010102243200000123122320220200121013002101200240202112223432301000002023411000100012334123023002201420331200000023232222312120001423001120240202021300010022002200100121043232210000000000000100221310000100230011012003312021010000201200222232110000101261013300210131212100000010200010043011020120100010120110100000235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ
1	MUSTER	2vs1A	0.258	0.909	2.912	threading_1	RSSPLR--VKCGGCTLQHLNYDYQLEFKRKKLKRILG------FEVEVVPSPFGHRNRIDLAITKD-----GIGFREKWKIVDIDEP-VFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGN-LPDPTN--------YFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV---EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK----GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDMFPHTPHVELVAKLV--
2	SPARKS	2jjqa	0.262	0.915	5.428	threading_2	VR----SSPLRVGCTLQHLNYDYQLEFKRKKLKRIL---GFEVEVVP-SPKIFGHRNRIDLAIT----KDGIGFREKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPD---------PTNYFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV---EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEFEVASDREV---SVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDMFPHTPHVELVAKLV--
3	PROSPECT2	2jjqA	0.252	0.920	4.992	threading_3	MRIRKLNDDLRVGCTLQHLNYDYQLEFKRKKLKRILGFEV------EVVPSPKIHRNRIDLAIT----KDGIGFREKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPD---------PTNYFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSEL---VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE----VSVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDMFPHTPHVELVAKL--V
4	PPA-I	2vs1A	0.257	0.912	4.303	threading_4	RSSPLR--VKCGGCTLQHLNYDYQLEFKRKKLKRILG------FEVEVVPSPFGHRNRIDLAITKD-----GIGFREKWWKIVDIDEPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPD---------PTNYFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV---EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV----KGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDMFPHTPHVELVAKLV--
5	HHPRED-l	1uwv_A	0.237	0.891	5.110	threading_5	PRCPHF--GVCGGCQQQHASVDLQQRSKSAALARL-KHDV----SEVIADVPWGYRRRARLSLNYLPQQLQ-GFRKASSDIVDVKQCPILAPQLEALLPKVRACLGSL-----QA-RHL---GHVELVQAT-SGTL-IL-RHTAPLS-SADREKLER----FSHSEGLDLYLAPDS------EILETVSGE-P-WYDSNGLRLTFSPRDFIQVNAGVNQK-VARALEWLDVQPEDRVLDLFCG-GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTWAKNGFDKVLLDPARAGAA-GV-QQIIKLEPIRIVYVSCNPATLARDSEALAGYTIARLA-LD-FPHTGHLES-VLFSR-
6	HHPRED-g	1uwv_A	0.238	0.896	5.154	threading_6	ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL-KHDVS----EVIADVPWGYRRRARLSLNYLKTQQLQ-GFRKAGSSVDVKQCPILAPQLEALLPKVRACLGS-----LQA-RHLGHVELVQAT----SGTL-ILRHTAP--LSSADREKLER----FSHSEGLDLYLAPDS------EILETVSGE-PW-YDSNGLRLTFSPRDFIQVNAGVNQK-VARALEWLDVQPEDRVLDLFCG-GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKAKNGFDKVLLDPARAGAA-GV-QQIIKLEPIRIVYVSCNPATLARDSEALLGYTIARLA-LD-FPHTGHLES-VLFSR-
7	SP3	2jjqa	0.253	0.917	5.409	threading_7	WKL-VRSSPLRVGCTLQHLNYDYQLEFKRKKLKRIL------GFEVEVVPSPFGHRNRIDLAIT----KDGIGFREKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNL---------PDPTNYFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSEL---VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEFEVASDREV---SVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDMFPHTPHVELVAKLV--
8	SAM-T99	2vs1A	0.262	0.917	6.828	threading_8	LVRSSPLRVKCGGCTLQHLNYDYQLEFKRKKLKRIL----GFEVEVVPSPKIFGHRNRIDLAIT----KDGIGFREKWWKIVDIDE-PVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGN-LPDPTNYF--------DFDSIYWSVNRSKSDVSYGD-IERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKG----DTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML--YRIDEIVALDMFPHTPHVELVAKLV--
9	MUSTER	3bt7A	0.206	0.907	2.528	threading_9	------------GSHLPTEQYEAQLAEKVVRLQSMMAPFSDLV-PEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLSNQAVVSLLYHKK-LDDEWRQEAEALRDALRAQ-------NLNVHLIGRATKTKIELDQDYIDERLKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSTHKVERLALFDQFPYTHHMQCGVLLTAK
10	SPARKS	3bt7a	0.207	0.915	4.950	threading_10	------------GSHPEHLPYEAQLAEKVVRLQSMMAPFSDLV-PEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH-------KLFQIDYLT-TLSNQAVVSLLYHKKLD-DEWRQEAEALRDALRAQNLNVHLI-------GRATKTKIELDQDYIDERLKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLQTHKVERLALFDQFPYTHHMQCGVLLTAK

Predicted Tertiary Structure


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TM-score=0.762 to 1uwvA SCOP code=b.40.4.12	TM-score=0.778 to 1uwvA SCOP code=b.40.4.12	TM-score=0.761 to 1uwvA SCOP code=b.40.4.12	TM-score=0.767 to 1uwvA SCOP code=b.40.4.12	TM-score=0.768 to 1uwvA SCOP code=b.40.4.12