Template-based Modeling Results for RNT_ECOLI

Submitted Primary Sequence

>Length 215
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
CCCCCCCCCHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEECCCEEEEEEECCCCCCCCHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
55332322211221211000000010021224211001000000212432211231100000102221302330020110112221321121230023003101300211103300000000200010001003303133231220000000000022023110120031020313222000001001000100020021035121222221333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
1	MUSTER	2f96A	0.602	0.912	3.537	threading_1	-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGD-EKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLD-HPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
2	SPARKS	2f96a	0.612	0.912	4.500	threading_2	-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVG-DEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKL-DHPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
3	PROSPECT2	2is3A	0.863	0.916	3.766	threading_3	L------TGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKDEQGWL--PDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKA-SGCNRAIVAHNANFDHSFAAAERASLKRN--PFHPFATFDTAALAGLALGQTVLSKACQTAGDF-DSTQAHSALYDTERTAVLFCEIVNRWKRLGGWP------L
4	PPA-I	2f96A	0.607	0.912	5.586	threading_4	-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGD-EKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKL-DHPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
5	HHPRED-l	2f96_A	0.628	0.912	4.577	threading_5	------RHP-ARRFRGYLPVVVDVETGGFNSATDALLEIAATTVG-DEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLR-AVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKE-GGW--------
6	HHPRED-g	2f96_A	0.628	0.912	4.687	threading_6	------RHP-ARRFRGYLPVVVDVETGGFNSATDALLEIAATTVG-DEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLR-AVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKE-GGW--------
7	SP3	2f96a	0.607	0.912	4.533	threading_7	-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGD-EKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKL-DHPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
8	SAM-T99	2p1jB	0.260	0.786	5.511	threading_8	-----------------TFVVLDFETTGLDPQVDEIIEIGAVKIQGGQ-----IVDEYHTLIKP--SREISRKSSEITGIT---------QEMLENKRSIEEVLPEFLG-FLEDSIIVAHNANFDYRFLRLWIKKVMG---LDWERPYIDTLALAKSLLKSYSLDSVVEKLGLGPFR--HHRALDDARVTAQVFLRFVEMMKKEGHHH-------
9	MUSTER	2is3A	0.954	0.916	3.467	threading_9	------LTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLK-DEQGWL-PDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCN-RAIVAHNANFDHSFAAAERAS--LKRNPFHPFATFDTAALAGLALGQTVLSKACQTAG-DFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPL------
10	SPARKS	1j53a	0.235	0.772	3.799	threading_10	-----------------RQIVLDTETTGMNQEGHKIIEIGAVEVVNRR----LTGNNFHVYLKP--DRLVDPEAFGVHGIAD-EFLLDKPTFAEVADEFMDYI---------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCVTDSLAVARKMFPRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG----------------

Predicted Tertiary Structure


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TM-score=0.949 to 2f96A TM-score=0.928 to native SCOP code=c.55.3.5	TM-score=0.952 to 2f96A TM-score=0.926 to native SCOP code=c.55.3.5	TM-score=0.952 to 2f96A TM-score=0.934 to native SCOP code=c.55.3.5	TM-score=0.873 to 2f96A TM-score=0.902 to native SCOP code=c.55.3.5	TM-score=0.950 to 2f96A TM-score=0.923 to native SCOP code=c.55.3.5

Experimental Structure

Download 3nh1A

SCOP code=c.55.3.5