Template-based Modeling Results for RFAJ_ECOLI

Submitted Primary Sequence

>Length 338
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCHHHEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
55323223233232132322323232100000001110020000001000321331200000002212310021003003323120000202231131121231112000010000200122121000000000010000200201122000000210210111001302213111110110000000320011211220010022233213122110000002110010131000011021313331131023211320000000021211132111100200110032021333223213101201210121122221000000000110222245
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
1	MUSTER	1ss9A	0.190	0.796	2.205	threading_1	---------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFMPTNYASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSEEWRGKL-----------------------------------------
2	SPARKS	1ga8a	0.187	0.793	5.262	threading_2	----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGAD-GEYYFNAGVLLINLKKWRRHDIFKS-SEWVEQYKD-VQYQDQDILNGLFKGGVCYANSRFNFPTNYAFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSTVPEEWRGKL--------------------------------------
3	PROSPECT2	1ga8a	0.197	0.796	3.398	threading_3	----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGAD-GEYYFNAGVLLINLKKWRRHDIFKSSEWVEQYKD--VQYQDQDILNGLFKGGVCYANSRFNFPTNYAFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVP-------------------------------------EEWRGK
4	PPA-I	1ss9A	0.186	0.811	2.926	threading_4	---------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFMPTANASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVPEEWRGKL------------------------------------
5	HHPRED-l	3tzt_A	0.235	0.654	7.847	threading_5	--------------------------ADALLLTLDENYIPQ-KVL-TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-------------PKE-YYRLLAGEFLPENLGEILYLDPD-LVINPLDDLLRTDISDYILAAASH--------------------YYNSGLLLINLKRAREEIDPDEIFSFVEDN--------QDILNA-YGDRIYPLDDIYNYDARNYSSIRSK-KQADLAWL-DHTVVLHFCGRDKPWKKNHRNKFTSLYKHY-SLTKRY------LA------------------------------------
6	HHPRED-g	3tzt_A	0.231	0.654	6.929	threading_6	--------------------------ADALLLTLDENYIPQ-KVL-TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-------------PKE-YYRLLAGEFLPENLGEILYLDPD-LVINPLDDLLRTDISDYILAAASH--------------------YYNSGLLLINLKRAREEIDPDEIFSFVEDN--------QDILNA-YGDRIYPLDDIYNYDARNYSLIRSKKQ-ADLAWL-DHTVVLHFCGRDKPWKKNHRNKFTSLYKHY-SLTKRYLA------------------------------------------
7	SP3	1ga8a	0.187	0.793	4.980	threading_7	----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGADG-EYYFNAGVLLINLKKWRRHDIFKS-SEWVEQYKD-VQYQDQDILNGLFKGGVCYANSRFNFPTNYAFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGAERFTELAGTTVPEEWRGKL--------------------------------------
8	SAM-T99	1ss9A	0.195	0.757	8.340	threading_8	---------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANASR--HTDPLYRDVAVSHYCGPAKPWHRDCTAWGAERFTE----------------------------------------------------
9	MUSTER	3tztA	0.219	0.663	1.611	threading_9	--------------------------ADALLLTLDENYIPQ--KVLTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRA--------------TPKEYYRLLAGEFLPENLGEILYLDPDLVI-NPLDDLLRTDISDYILAAA--------------------SHYYNSGLLLINLKRAREEIDPDEIFSFVED--------NQDILNAYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYSLTKRYLA-------------------------------------------
10	SPARKS	3tzta	0.219	0.663	4.217	threading_10	--------------------------ADALLLTLDENYIP--QKVLTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRA--------------TPKEYYRLLAGEFLPENLGEILYLDPDLVI-NPLDDLLRTDISDYILAAASH--------------------YYNSGLLLINLKRAREEIDPDEIFSFVED--------NQDILNAYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYSLTKRYLA-------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.869 to 1ss9A SCOP code=c.68.1.4	TM-score=0.870 to 1ss9A SCOP code=c.68.1.4	TM-score=0.877 to 1ss9A SCOP code=c.68.1.4	TM-score=0.879 to 1ss9A SCOP code=c.68.1.4	TM-score=0.891 to 1ss9A SCOP code=c.68.1.4