Template-based Modeling Results for RFAH_ECOLI

Submitted Primary Sequence

>Length 162
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
CCEEEEEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEEEECCCCHHHEECCCCEEEEECCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECHHHEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
421000000220113101310243211000011222222343322121210210000000122222210221310000023221002122210210122333322332222311200012111410201022123422000001002230312022310122
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
1	MUSTER	2xhcA2	0.224	0.907	3.729	threading_1	-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEE-------------RRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYE-LGFKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
2	SPARKS	1m1ga	0.173	1.000	5.051	threading_2	EKKWYALQVEPGKENEAKENLLKVVDEVIVPAEEKVVIRAQAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKEFEKGDQVRVIEGPFMNFTGTVEEVHPERKLTVMISIFGRMTPVELDFDQVEKI
3	PROSPECT2	2xhcA2	0.224	0.907	2.795	threading_3	-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEER-------------RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYELG-FKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
4	PPA-I	2xhcA2	0.224	0.907	4.414	threading_4	-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEER-------------RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYE-LGFKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
5	HHPRED-l	2oug_A	1.000	0.870	5.877	threading_5	-QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK--------------KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN------
6	HHPRED-g	1m1h_A	0.176	0.630	6.420	threading_6	EKKWYALQVEPGKENEAKENLLKLVDEVIVPAEEKVVIRTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKR------------------------------------------------------------
7	SP3	1m1ga	0.173	1.000	4.864	threading_7	LKKWYALQVEPGKENEAKENLLKVVDEVIVPAEEKVVIRAEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKEFEKGDQVRVIEGPFMNFTGTVEEVHPERKLTVMISIFGRMTPVELDFDQVEKI
8	SAM-T99	2xhcA2	0.224	0.907	4.418	threading_8	-KKWYIVLTMSGYEEKVKENIEKKVGRIVIPEE-------------RRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL-EEYELGFKVGDMVKIISGPFEDFAGVIKEIDPERELKVNVTIFGRETPVVLHVSEVEKI
9	MUSTER	2ougA	0.979	0.870	3.493	threading_9	-QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--------------VYKKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN------
10	SPARKS	2ouga	0.979	0.870	4.602	threading_10	-QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--------------VYKKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN------

Predicted Tertiary Structure


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TM-score=0.615 to 1nppA TM-score=0.593 to native SCOP code=b.114.1.1	TM-score=0.615 to 1nppA TM-score=0.594 to native SCOP code=b.114.1.1	TM-score=0.685 to 1nppA TM-score=0.524 to native SCOP code=b.114.1.1	TM-score=0.611 to 1nppA TM-score=0.602 to native SCOP code=b.114.1.1	TM-score=0.615 to 1nppA TM-score=0.594 to native SCOP code=b.114.1.1

Experimental Structure

Download 2ougA

SCOP code=b.114.1.1