Template-based Modeling Results for RCNA_ECOLI

Submitted Primary Sequence

>Length 274
MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR
CCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR
4531121122010000000000000000022110100000000113120220010000000010000000000000003301230022002100000000000000011022222223213012121211313121211221213223211101211020132112233121210000000001110120000000002032011000000010000000000000000000120143120021002101000000000000000020011125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR
1	PROSPECT2	1xm9A	0.084	1.000	1.356	threading_1	IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQRNLVFRSTTNKLETRAEIQKQLTGLLWNLLIADALPVLADRVIIPFSPEVFFNATGCLRLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVQVFPEVTRNSEDILSSACYTVRNLMMLNNIINLCR
2	HHPRED-g	3aqp_A	0.096	0.876	1.024	threading_2	FERIKEELPEHNIAHLLAAAALYQY--ATG-----------------PV-RGFAVILAIGVVASFSNLVFSRHLERLADRGNFMGPARYVTAATLLLAALAAGVVFAKGFN-YSIDFTEKGFPGKEAQV------YRELVKLPPLSDELKATV--LASETVGPAI-GEELRRNAVMAVLVGLGLIWGVASIVAGMYSLLGLEFSIPTIAALLTIVGYSINDS----IVVSDRRENQKLLRHLPQTLSRTVMTSLTTLLILALLFGGSVLRDFAL
3	PROSPECT2	1ejlI	0.055	1.000	1.331	threading_3	VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRSFLGKTDCSPIQFESAWALTNIEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACRNKNPAPPTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGVYLVHCGIIEPLMNLLTKIIQVILDAISNIFQAAEIEKYFS
4	PROSPECT2	1t33A	0.093	0.748	1.282	threading_4	MNKGEQAKSQ-----LIAAALAQFGEYGLHAGQNIAAITYYF-GSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPT----------------------------------------------------SAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHA------LLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLI-----LHGLTQ
5	PROSPECT2	3qxyA	0.080	1.000	1.261	threading_5	LDPVACFLSSIGGLLEVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHLRVRSLELYHQLVALVMAYSFQEPLEKEPNSPNHLANHNTQPIPKGHEIFNTYGQMAFVEPYPDNTDEAALQGTKTEAERHLVYERWDREEVLTEEELTTTLKVLCMPAEEFRELKDNIPKLKASWRQLLQNSVLLTDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLELTS
6	PROSPECT2	1ee4a	0.084	1.000	1.248	threading_6	LPQMTQQLNSDDMQEQLSATVKFRLVEFMRENQPEMLQLEAAWGTSAQTKVVVDADAVPLFIQLLYVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTEYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVITISNITAGNTEQIQAVIKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLNRIIEVTLDALENILKMGEADKEAR
7	MUSTER	3cucB	0.110	0.898	0.724	threading_7	-SNIKQLYSKWKSLQPLKPEDLKRWNDKF---KLEFNYNSNHLGNTLTYGQTKLLLFASLKDYEEKAHNVGLEIKQEAQDKERPLTESFIRELNRTILV-----------QDYWIKVGEYKSRPNSVLTATGEVFSYASPEETPAFTSLVDWYN------LEADKGILTPVELAALLHYRYIRIHPGNGRIARLLVNFVL--HRYGYPIVI-HSEDKSNYLNILHQCDVEAGLTPSDGAATLNDILPFVNYLSSCLIRSLTLAIKAAK----IE
8	SPARKS	2xwub	0.117	0.971	0.672	threading_8	FPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVY-------RPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLYSWQHTEALLYGFQSIAE
9	PROSPECT2	3a0oA3	0.075	0.978	1.244	threading_9	LSAFADAVAKDPNHCGWAEFYEKSVEPWLERPVMRHLAIAGRVLGRDDLLDASRKWLLADEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTR------EVADHVIAHARIHVFPYDSQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPQVEAVSPADLP
10	PPA-I	3g61A1	0.091	0.847	0.812	threading_10	YMLVGTLAAIIHGVALPLMMLIFGDMT------DSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVG------------------------------------ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQAL

Predicted Tertiary Structure


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TM-score=0.671 to 1xm9A SCOP code=a.118.1.24	TM-score=0.386 to 2ojeD SCOP code=a.202.1.1	TM-score=0.649 to 1wa5B SCOP code=a.118.1.1	TM-score=0.800 to 1t33A SCOP code=a.4.1.9	TM-score=0.565 to 1p0yB SCOP code=a.166.1.1