Template-based Modeling Results for RARD_ECOLI

Submitted Primary Sequence

>Length 296
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
55233221000000000000000000020023010100000000000000000000022021012202122300000000000000000000012113001000000000000000000002230231100000000000001012102000000000000000000122031301100000000000000000000012220211212110000000000010000000010023031110000110000000000000122302121000000000000000020112233235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRTSK
1	MUSTER	3zuxA	0.140	0.939	1.043	threading_1	LSSSFIGKTFSLWAALFAAAAFFPDTFKWAGPY---------IPWLLGIIMFGMGLTLKPSDFDILFKHPVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCP-TASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFGELMSIVKMVLLPIVLGLIVHKVLGTEKLTDALPLVSVAAIVLIIGAVVGA-----SKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLKALTIEVGMNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA---
2	SPARKS	2x1gf	0.070	0.919	1.335	threading_2	GGPKIVLNRLCISLGAYIVHMLGEEVINTFQNQRSADVQLWIMLEVLTAIPEEAQVIHKRVVLRAEIAKRVQLVIHTVERYLKLQM-----------NRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHDENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREND---NEDIIVHIYMLFVSSVERHSTLLLSGITSADP----ELSILVHRIVQEILHCTDKPGIYPVEESC------STMALAFWYMLQDEVFAHK
3	PROSPECT2	2bkuB2	0.113	0.953	1.609	threading_3	---TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLLNQVDSP-----VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGFIPYLNDIMALCVAAQNTKPENGTLEALDYQIK---VLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAWVIDYIKRTRSGQL
4	PPA-I	3zuxA	0.112	0.966	1.497	threading_4	LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPY------IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFGMLMSIVKMVLLPIVLGLIVHKVLG-SKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYKALTIEVGMNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA---
5	HHPRED-l	3b5d_A	0.111	0.334	3.316	threading_5	--------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFS-------------------------------EGFT---R--LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---------
6	HHPRED-g	3b5d_A	0.134	0.328	2.753	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTMKFSE-----------------------------G---F-----TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS---------
7	SP3	3zuxa	0.147	0.939	0.509	threading_7	LSKSFIGKTFSLWAALFAAAAFFPDTFKWAGPY---------IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFIMPATAWCLSKLLNLGVILVGCCSNVMTYLVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGTEKLTDALPLVSVAAIVLIIGAVVGA--SKGKIM---ESGLLIFAVVVLHNGIGYLLGFFAAKWTGLKALTIEVGMNSGLAAALAAAHFAAA----PVVAVPGALFSVWHNISGSLLATYWAAK
8	SAM-T99	3b61A	0.156	0.324	0.704	threading_8	--------------------------------------------------------------------------YIYLGGAILAE--------------------------------------------------------VIGTTLMKFSWPSVGTIICYCA-------------FWLLAQTLAYIPTGIAYAI-------------------------------------------------WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR--------
9	MUSTER	1t5jA	0.115	0.882	0.856	threading_9	VKMRDKILGSVFGAVIGDALGMKEEIKKLYGFVDSYV-LAGKLDDTEQAICLIKSLTKEGIDIKKFAN--CLIAWKNKNPPDIGLTSLMAIDKLENNDYSGV--SSSCGAAMRIYPLGIVFHNNLKKLKEEVIKASKI---------NNKTAIAGALAIAFFVSSALKDRKD----FSLLDECYNYIKDIDEEFAKKLLEIK---NFNNLDYIYDYFGTGVKTDEVVPSAIATYLLTD----------NFKEGMLKCINAGGD---TDSLASMYGAMAGAYYGF-KEWIDGLKNKE
10	SPARKS	2xwub	0.119	0.966	1.233	threading_10	ISNVQLADTVMFTIGA---------LSEWLADHPVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHPNPVVVVLQQVFQLIQKVLSKWLNDAVKTLLDDFAPMVPQLCEMLGRMYSTIPQIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL-CERLDVKAVFQCAVLAAPTVKASCGFFTELLPRCG

Predicted Tertiary Structure


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TM-score=0.420 to 1j30A SCOP code=a.25.1.1	TM-score=0.429 to 1pv6A SCOP code=f.38.1.2	TM-score=0.653 to 2vglB SCOP code=i.23.1.1	TM-score=0.756 to 3ea5B SCOP code=a.118.1.1	TM-score=0.422 to 1wu3I SCOP code=a.26.1.3