Template-based Modeling Results for PSD_ECOLI

Submitted Primary Sequence

>Length 322
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEEECCEECHHHHCCCCHHHHHHCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEECCCEECCCHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEECCCEEEEEECCCEEEEEEECCCEEECCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
4431011001100021001200000022311201310020002112020320332322223101200012033322222223200000020100100203433101020221102100222220022133000000000130000000002010110000202001103200321331112011000102141000000000000000010011020112442212101122233332120221211010101000000012220101330332210211210000122221232222223233231333223223233344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
1	PROSPECT2	1s8eA	0.078	0.876	1.547	threading_1	MYEQFHKPQREEEFAEAFKNALEIAVQENVSRPSPGTLKKAIALLQ-IPKEHSIPTQRGPSVLNLLLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSE-------------ARGEDYFEIGLGDLPEGYLY------YALRYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERY------GVNKGFYIVEDFKPRFVEIKVFIDVKIKGSEERLIPLIPKNAYVRL--NIGW-----------RKPFDLTEIKELLNVEYLKIDTW-RI
2	HHPRED-l	3our_B	0.136	0.435	1.878	threading_2	---------------------------------------------------------------------------------AIEIIAPLSGEIVNIEDVP--------------------DVVFAEKIVG---DGIAIKPTG-NKMVAPVNGTIGKIF-----------------------ETNHAFSIESDDGVELFVHFGIDTVEL------------KGEGF------TRIAEEGQTVKAGDTVIEFDLASLTPVVINMDEIKELN-KLS-GSVVVGTPVLRVTK----------------------------------
3	PROSPECT2	1ii7a	0.056	0.888	1.478	threading_3	MYEQFHKPQREEEFAEAFKNALEIAVQENVSRPSPGTLKKAIAL----LQIPKEHSIRGPSVLNLLLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSE-------------ARGEDYFEIGLGDLPEGYLY------YALRYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERY------GVNKGFYIVEDFKPRFVEIKVFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKI-------DTWRI
4	HHPRED-l	2gpr_A	0.172	0.450	1.335	threading_4	---------------------------------------------------------------MWFFNKN------------LKVLAPCDGTIITLDEVE--------------------DEVFKERMLGDGFAIN---PKS-NDFHAPVSGKLVTA----------FP-------------TKHAFGIQTKSGVEILLHIGLDTVSL------------DGNGF------ESFVTQDQEVNAGDKLVTVDLVKSPIIFTNNGGKT--LEIVKMGEVKQGDVVAILK-----------------------------------
5	PROSPECT2	1qfma1	0.096	0.969	1.356	threading_5	MLSAWLEDPDSEQTKAFVEAQNKITVPFLEQPIRGLYKERMTELYDYP----KYSCHFKKGKRYFYFYNTGLQNQRDSLEGEARVFSGSDWVTIKFMKVDGAKELPDVSMAWTHDGKGKSDGTETSTNLHQKLYYHVLEPKWMGGAELSDDGRYVLLSIREGPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV------TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEWVACVRSNFLVLCYLHDVKNTLATGALLKIFPLEVGSVVGYSGQKKDTSFLSPGIIYHCDLTKEELEPRVFREVTV
6	HHPRED-l	1f3z_A	0.113	0.438	1.131	threading_6	---------------------------------------------------------------------------------TIEIIAPLSGEIVNIEDV--------------------PDVVFAEKIVGDGIAIK---PTG-NKMVAPVDGTIGKIF-----------------------ETNHAFSIESDSGVELFVHFGIDTVEL------------KGEG------FKRIAEEGQRVKVGDTVIEFDLATLTPVVISNMD-EIKELIKLSGSVTVGEPVIRIKK----------------------------------
7	PROSPECT2	1fc6a	0.100	0.963	1.336	threading_7	VTSEQLLFLEAWFNGQSWFKLRETYLKKEPD--RRAQTYDAIR----KLAVLDDPFT-RFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGIVTVDGTAVKGSLY---DVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTGLVLDIRNNGGGLFPAGVNVARLVDRGDLVLIADSQGIADGNSIDSATPLVVLVNRGTRGLIAGERGLIQTVVDLSDGSGVAV--TVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVAPRLF
8	PROSPECT2	1io1a	0.062	0.950	1.274	threading_8	NIKGLTQASRNANDNNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNESGQTQFNGVKVLAQDNTLTIQVGAQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDTTGKYYAKVTGTGKDGYYEVSVDKTNGEVTLAGGATSPLT----GGLPATATEDVKNVQVAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQ------NKDGSISINTTKYTADDGTSK------TALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPGNTVNNLTSAR
9	MUSTER	2opwA	0.135	0.829	0.648	threading_9	QLQKFQQDLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ-LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPV--------------FKSITHSFQTLARSLGLQMPVVVQS----MYIFKQPHFGG-EVSPHQDASFLYTEP---------LGRVLGVWIAVELENGCLWFIP------GSHTSGVSRRMVRAPPGTSFLGSEPARDNSLFVPTP-------VQRG--ALVLIHGEVVHKSKQNLSDRS-RQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT----------
10	SPARKS	1l0qa	0.102	0.910	0.654	threading_10	VIDVTSNKVTATIP----------VGSNPGAVISPDGTKVYV--ANAHSNDVSIIDTATNN-----VIATVPAGSSPVSPDGKQVYVTASSTLSVID-TTSNTVAGTVKT--------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI--AVTPDGTKVYVANFSSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYNVDKYFNTVSIDTGTNKITARIPVGPDPAGIAVDGKKVYVALSFNTVSVIDTATNTITATAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIF-LSEPV

Predicted Tertiary Structure


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TM-score=0.680 to 1s8eA SCOP code=d.159.1.4	TM-score=0.632 to 2gprA SCOP code=b.84.3.1	TM-score=0.645 to 1s8eA SCOP code=d.159.1.4	TM-score=0.646 to 2gprA SCOP code=b.84.3.1	TM-score=0.546 to 1n6fA SCOP code=b.36.1.3