Template-based Modeling Results for PHOB_ECOLI

Submitted Primary Sequence

>Length 229
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCEEEEECCEEEECCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
5522000121221012000100432111001021131002102422100000001012010020021035222243000000003123302010031101010011010300000011112222322232102021010013202011242202001210100100021232100021001200112021321000000220042135123320000011100102244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
1	MUSTER	2oqrA	0.392	0.969	3.736	threading_1	-ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPNPVHLVTVRGLGYKLE---
2	SPARKS	1ys6a	0.377	0.974	4.014	threading_2	-SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ-
3	PROSPECT2	1ys6A	0.377	0.974	4.764	threading_3	-SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ-
4	PPA-I	2oqrA	0.387	0.969	4.060	threading_4	-ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPNPVHLVTVRGLGYKLE---
5	HHPRED-l	2gwr_A	0.419	0.939	3.066	threading_5	-RQRILVVDDDASLAE-LTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL-LPG-NGIDVCRVLRADS---GVPIV-LTAKTDTVDVVLGLESGADDYI-KPFKPKELVARVRARLRRNDDE-PAE-LSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYR--ADTRLVNVHVQRLRAKVEKDPNPTVVLTVRGVGYKAGPP-
6	HHPRED-g	1kgs_A	0.324	0.917	2.543	threading_6	-NVRVLVVEDERDLADLITEALKKE-FTVDVCYDGEEG---ALNEPFDVVILDI-LPVHDGWEILKS-RESG--VNTPVL-LTALSDVEYRVKGLN-GADDYLPKPFDLRELIARVRALIRRKSES-KSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLV-NKNRVVTKEELQEHLW-----VFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARDE-
7	SP3	1ys6a	0.377	0.974	3.817	threading_7	-SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ-
8	SAM-T99	2oqrA	0.387	0.969	3.555	threading_8	-ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEDPANPVHLVTVRGLGYKLE---
9	MUSTER	1ys6B	0.373	0.983	3.685	threading_9	-SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ-
10	SPARKS	3r0ja	0.333	0.956	3.606	threading_10	PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVPG---DGFGVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKNV---RLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT-GEKRLLHTLRGVGYVLREP-

Predicted Tertiary Structure


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TM-score=0.603 to 1ys6B TM-score=0.619 to native SCOP code=a.4.6.1	TM-score=0.607 to 1ys6B TM-score=0.616 to native SCOP code=a.4.6.1	TM-score=0.948 to 1ys6B TM-score=0.862 to native SCOP code=a.4.6.1	TM-score=0.948 to 1ys6B TM-score=0.855 to native SCOP code=a.4.6.1	TM-score=0.605 to 1ys6B TM-score=0.621 to native SCOP code=a.4.6.1

Experimental Structure

Download 2iynB

SCOP code=c.23.1.1