Template-based Modeling Results for PEPT_ECOLI

Submitted Primary Sequence

>Length 408
MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
CHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEECCCCCCEECHHHCCHHHCEECCCEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
423002101200102141422243122232122002101310351211102113400000102122334110000000001022121331302002113111000122321002210121120103200012131110111310000000001002334132020200000112113103211031030210000101220201020221110202010110111114121100010002001102223233102011000101112221320102000221243102212310120022004213330201020212222233412322200200120033041301020021000000002100100000010221114211010200220020012002112454
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
1	MUSTER	1vixA	0.998	1.000	3.185	threading_1	LDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
2	SPARKS	3rzaa	0.256	0.870	6.720	threading_2	EQRLLNTFLELVQIDSETGNE----------STIQPILKEKFIALGL-DVKEDEAAKHPKLVCTNSTIEVPKLYLTSHDTVVP---AINVKPIV-----------------------------KDDGYIYSDGTTILGADDKAGLAAL-EVLQVIKEQQIPHGQIQFVITVGEESGLGAKELNSELLDADFGYAIDASADVGTTVVGAPTQLISAKIIGKTAHASTPKE-GVSAINIAAKAISRKL-GQVDEITTANIGKFHGGSATNIVDEVILEAEARSHDPERIKTQVKHT-DVFETTASELG--GKAEVTVEQSYPGFK--INDNEAVVKIAQESARNLGLSANTIISGGGSDGSIINTFGIPSVILGVGYEKIHTTNER-PIKSLNLLASQVLEIIKIVARQ-
3	PROSPECT2	3ifeA	0.536	0.998	5.475	threading_3	YEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDNGYVMATLPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLINPQIKHGKIRVAFTPDEEIGRGPAHFDVEAFGASFAYMMDGGPLGGLEYESFNAAGAKLTFNGTNTHPGTAKNKMRNATKLAMEFNGHLPVEEAPEYTEGYEGFYHLLSLNGDVEQSKAYYIIRDFDRKNFEARKNTIENIVKQMQEKY-GQDAVVLEMNDQYYNMLEKIEPVREIVDIAYEAMKSLNIEPNIHPIRGGTDGSQLSYMGLPTPNIFTGGENYHGKFEYVSVDVMEKAVQVIIEIARRFEEQA
4	PPA-I	1vixA	0.998	1.000	4.313	threading_4	LDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
5	HHPRED-l	1fno_A	0.939	0.961	3.521	threading_5	-DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE-GLVNITLSEKGTL-ATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPV-FPVLHQLLGQTLITTDGKTLLGADDKAGVAEI-TALAVLKGNPIPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGV-VNALSLAARIHAEVPADEAPETTEGYEGFYHLAS-KGTVDRAE-HYIIRDFDRKQFEARKRK--EIAKKVGKGLHPDCYIELVIEDSYYN-REKVVEHPHILDIAQQA-RDCHITPE-KPIRGGTDGAQLSF-GLPCPNLFTGGYNYHGKHEFVTLEG-EKAVQVIVRIAELTAKR-
6	HHPRED-g	1fno_A	0.936	0.963	3.967	threading_6	-DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE-GLVNITLSEKGTL-ATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPV-FPVLHQLLGQTLITTDGKTLLGADDKAGVAEI-TALAVLKGNPIPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGV-VNALSLAARIHAEVPADEAPETTEGYEGFYHLAS-KGTVDRAE-HYIIRDFDRKQFEARKRK--EIAKKVGKGLHPDCYIELVIEDSYYN-REKVVEHPHILDIAQQA-RDCHITPE-KPIRGGTDGAQLSF-GLPCPNLFTGGYNYHGKHEFVTLEG-EKAVQVIVRIAELTAKRG
7	SP3	3rzaa	0.256	0.870	7.109	threading_7	IQRLLNTFLELVQIDSETGN----------ESTIQPILKEKFIALGL-DVKEDEAAKHPKLVCTNSTIEVPKLYLTSHDTVVP---AINVKPIV-----------------------------KDDGYIYSDGTTILGADDKAGLAAL-EVLQVIKEQQIPHGQIQFVITVGEESGLGAKELNSELLDADFGYAIDASADVGTTVVGAPTQLISAKIIGKTAHASTPKE-GVSAINIAAKAISRKL-GQVDEITTANIGKFHGGSATNIVDEVILEAEARSHDPERIKTQVKHT-DVFETTASELG--GKAEVTVEQSYPGFK--INDNEAVVKIAQESARNLGLSANTIISGGGSDGSIINTFGIPSVILGVGYEKIHTTNER-PIKSLNLLASQVLEIIKIVARQ-
8	SAM-T99	3ifeA	0.536	0.998	6.692	threading_8	KEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDNGYVMATLPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEENIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLINPQIKHGKIRVAFTPDEEIGRGPAHFDVEAFGASFAYMMDGGPLGGLEYESFNAAGAKLTFNGTNTHPGTAKNKMRNATKLAMEFNGHLPVEEAPEYTEGYEGFYHLLSLNGDVEQSKAYYIIRDFDRKNFEARKNTIENIVKQMQEKYG-QDAVVLEMNDQYYNMLEKIEPVREIVDIAYEAMKSLNIEPNIHPIRGGTDGSQLSYMGLPTPNIFTGGENYHGKFEYVSVDVMEKAVQVIIEIARRFEEQA
9	MUSTER	3ifeA	0.538	0.998	2.989	threading_9	NEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDNGYVMATLPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIHPQIKHGKIRVAFTPDEEIGRGPAHFDVEAFGASFAYMMDGGPLGGLEYESFNAAGAKLTFNGTNTHPGTAKNKMRNATKLAMEFNGHLPVEEAPEYTEGYEGFYHLLSLNGDVEQSKAYYIIRDFDRKNFEARKNTIENIVKQMQEKYGQDA-VVLEMNDQYYNMLEKIEPVREIVDIAYEAMKSLNIEPNIHPIRGGTDGSQLSYMGLPTPNIFTGGENYHGKFEYVSVDVMEKAVQVIIEIARRFEEQA
10	SPARKS	1fnoa	0.901	0.963	6.223	threading_10	-DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE-GLVNITLSEKGT-LATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSP-VFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIT-ALAVLKGNPIPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKG-VVNALSLAARIHAEVPADEAPETTEGYEGFYHLASK-GTVD-RAEHYIIRDFDRKQFEARKR--KEIAKKVGKGLHPDCYIELVIEDSYYNR-EKVVEHPHILDIAQQARDC-HITPE-KPIRGGTDGAQLS-FGLPCPNLFTGGYNYHGKHEFVTLE-GEKAVQVIVRIAELTAKRG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.996 to 1vixA TM-score=0.999 to native SCOP code=c.56.5.4	TM-score=0.996 to 1vixA TM-score=0.999 to native SCOP code=c.56.5.4	TM-score=0.797 to 1vixA TM-score=0.799 to native SCOP code=c.56.5.4	TM-score=0.927 to 1vixA TM-score=0.929 to native SCOP code=c.56.5.4	TM-score=0.996 to 1vixA TM-score=0.999 to native SCOP code=c.56.5.4

Experimental Structure

Download 1vixA

SCOP code=c.56.5.4