Template-based Modeling Results for NUDE_ECOLI

Submitted Primary Sequence

>Length 186
MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV
CCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV
554324422102111003130020100102024123210110212220000001124320000200011131100000201133231122001220132021202201100200012210112000000221233324143312010010102201200333303101000000002211322344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV
1	MUSTER	2yvpA	0.232	0.973	3.835	threading_1	MS----PWERILLEEILSEPV-RLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLGLL
2	SPARKS	1vhga	0.894	0.962	4.043	threading_2	-SKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERRPTNREAVIVPI--VDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSAPSYFSSK--NIVVAQDLYPESLEGDEPEPLPQVRWPLAH--DLLEDPDFNEARNVSALFLVREWLKGQGRV
3	PROSPECT2	2yvmA	0.232	0.973	3.927	threading_3	MS----PWERILLEEILSEPV-RLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLGLL
4	PPA-I	2yvpA	0.221	0.973	5.014	threading_4	----MSPWERILLEEILSEPV-RLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLGLL
5	HHPRED-l	1vhz_A	0.995	0.995	4.091	threading_5	LSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGR-
6	HHPRED-g	1mk1_A	0.182	0.887	3.650	threading_6	-------FETISSETLHTGAIFALRRDQVR-----IVTREVVEHFGAVAIVAMD-DNGNIPMVYQYRHTYGRRLWELPAGLLDAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGR--------TMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQP
7	SP3	1vhga	0.894	0.962	3.937	threading_7	-SKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERRPTNREAVIVPI--VDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSAPSYFSSK--NIVVAQDLYPESLEGDEPEPLPQVRWPLAH--DLLEDPDFNEARNVSALFLVREWLKGQGRV
8	SAM-T99	1v8mA	0.234	0.849	3.418	threading_8	------------RTYLYRGRILNLAL---------EGRYEIVEH--KPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLSG-DLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATLVGVLYYHAFLRG----
9	MUSTER	1vhgA	0.894	0.962	3.738	threading_9	-SKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERRPTNREAVIVPI--VDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSAPSYFSSK--NIVVAQDLYPESLEGDEPEPLPQVRWPLAH--DLLEDPDFNEARNVSALFLVREWLKGQGRV
10	SPARKS	2yvma	0.221	0.973	4.041	threading_10	----MSPWERILLEEILSEP-VRLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLGLL

Predicted Tertiary Structure


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TM-score=0.790 to 1vhgA TM-score=0.814 to native SCOP code=d.113.1.1	TM-score=0.757 to 1viqA TM-score=0.775 to native SCOP code=d.113.1.1	TM-score=0.934 to 1vhgA TM-score=0.930 to native SCOP code=d.113.1.1	TM-score=0.773 to 1vhgA TM-score=0.797 to native SCOP code=d.113.1.1	TM-score=0.758 to 1viqA TM-score=0.780 to native SCOP code=d.113.1.1

Experimental Structure

Download 1vhzB

SCOP code=d.113.1.1