Template-based Modeling Results for NIKC_ECOLI

Submitted Primary Sequence

>Length 277
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
4221122221010000000000000000300011113100011212002130101013101100000011010010010001111211010000001111010020001002001000200000000001220010000000001001000001110111122200200410101201000010001000000010001001000000000101100211103000001101300221011000000000000000100010012101121223345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
1	MUSTER	2onkC	0.124	0.841	1.181	threading_1	MRLLFSALLALLSSIILLFVLLPVAATVTL------QLFNFDEFLK---------SD-------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSALPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA-Y---YPMIAPTLIYERYLSEGLSAPVAAILILLSLAVFVALRIIG-----------------
2	SPARKS	2onkc	0.123	0.848	2.506	threading_2	------MRLLFSALLALLSSIILLFVLLPVAATVTLQLFNFDEFLK-------AASD-------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSALPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA----YYPMIAPTLIYERYLSEGLSPVAAILILLSLAVFVALRIIVG-----------------
3	PROSPECT2	1ezfa	0.062	0.989	1.383	threading_3	NSLKTCYKYLNQMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLLYQPDWRFMESKEKDRQVLEDFPTISLEFRKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGTERANSMGLFLQKTNIIRDYLEDQQGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAAYNNQQVFKGPAVKAIIYQY---MEEIYHRIPDSSTIRTQN
4	PPA-I	3dhwA	0.202	0.679	3.492	threading_4	---------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYGYINATVMNTVLVLLVILVYLIQFAGD----------------
5	HHPRED-l	3tui_A	0.192	0.733	5.152	threading_5	----------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTNAKLYRTVSAIVNIFRSIPFIILLVWMIPFVGIGLQAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG------GLGQIGYQYGY-IGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR--------
6	HHPRED-g	3tui_A	0.192	0.733	4.972	threading_6	----------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTNAKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG------GLGQIGYQYG-YIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR--------
7	SP3	2onkc	0.132	0.848	2.034	threading_7	MRLLFS--ALLALLSSIILLFVLLPVAATVT-------------LQLFNFDEF-------LKAAPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSALPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIPTLIYERYLSEGLSAAMP--VAAILILLSLAVFVALRIIVG-----------------
8	SAM-T99	3dhwA	0.207	0.679	1.352	threading_8	MWLLVR---------------------------------------------------------------GVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYIGYNATVMNTVLVLLVILVYLIQFAGD----------------
9	MUSTER	3dhwA	0.207	0.679	1.134	threading_9	---------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTGQKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYGYINATVMNTVLVLLVILVYLIQFAGD----------------
10	SPARKS	3dhwa	0.202	0.679	2.193	threading_10	---------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYGYINATVMNTVLVLLVILVYLIQFAGD----------------

Predicted Tertiary Structure


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TM-score=0.793 to 2onkC SCOP code=f.58.1.1	TM-score=0.826 to 2onkC SCOP code=f.58.1.1	TM-score=0.792 to 2onkC SCOP code=f.58.1.1	TM-score=0.843 to 1ezfB SCOP code=a.128.1.2	TM-score=0.786 to 3dhwA SCOP code=f.58.1.1