Template-based Modeling Results for NAPH_ECOLI

Submitted Primary Sequence

>Length 287
MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCCCCCHHCCCHHHHHHHCCCCCEEEECCCCCCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS
55344422022013110002001000011001000000000000000100202011010110010010000010001021210000000000000000003000000000010001001102321323322212210100000000000000000002100202000100000000000000000000000001000011020100100012301010112233403401100110132011212223332223122310010010032013300102232233355
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPWFGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKRLFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWINPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITVAATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFTITTRWSSGAKS
1	MUSTER	1qgkA	0.090	0.972	0.851	threading_1	EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY-----PQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGGVQEDALMAVSTLVEVLGGKPFLGIGLKNYAEYQVCLA---AVGLVGDLCRALQSNILLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYQAQVDKSDYD
2	SPARKS	2fug9	0.161	0.303	1.013	threading_2	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YPDAPVALKPRFHGRHVLTRHPLEKCIGCSLCAAACPAYAPAENDPENPVSAGEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYE
3	PROSPECT2	3kb9A	0.069	0.958	1.465	threading_3	PRQLHPYWPKLQETTRTWLLEKRLMPADKVEEYADGLCY----TDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDH--LHHEDTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTALRFADELADGTVRGKELSGAVRMRNWFDSWDDR------STPPYVNN
4	PPA-I	2h7oA1	0.059	0.592	0.813	threading_4	----------------------------RITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREVDKDQLKSFNSLILKTYRVIEDYVKGNFM-----LSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQP--VSSETYGFLNRLAEAKITLSQQLNTLQQQQESAKAQLSILINRSGS----------------------------------------------------------------------------------
5	HHPRED-l	1hfe_L	0.170	0.307	1.926	threading_5	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRTRIEYEM---HTPDPKADPDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGE---MGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWKDGKV-
6	HHPRED-g	1hfe_L	0.178	0.254	1.892	threading_6	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRTVMERIEYEMEAKCIGCDTCSQYCPTAAIGEMG----EPHSIPHIEACINCGQCLTHCPENAIEVEKKLKDGKPA
7	SP3	1gtea5	0.149	0.561	1.036	threading_7	------------------------------------------------------------------------------------------------------ELQGWDSPGTESHQKGKPVPR-IAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNERKPFIP----------------KKPIPAIKDVIGKALQYLGTFGEL------SNIEQVVAVIDEEMCINCGKCYMTCNDSG-YQAIQFDPETHLPTVTDTCTGCTLCLSVCPIDCIRMVSRTTPYEPK
8	SAM-T99	2vpzB	0.206	0.439	1.777	threading_8	--------------------------------------------------------------------------------------MPRYAMAIDLSLCVGCAACAVACKME------------------------------------------------------NEVPPGVFNLWIYPNLVVEFRPEQCLHNPPCVPVCPTGASY----QTKDGLVL-VDPKKCIACGACIAACPYDALHPAGY----------VSKCTFCAACVETCPTYCRTFGDLE------
9	MUSTER	2x1gF	0.091	0.993	0.804	threading_9	TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMAEAYSNMNRAVKCVGTWIIGYTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYP-AFVLIKMFLDSLSEITKWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSALSILVHRIVQEILHCTDKCSTMALAFWYMLQDEVFAHKCWIKPLYAHLTRILVRKSEQPDEKSLAKSDTFMYCYDLNDYILEILAQRHPTHWTKLEACIYSFQSVRQIPR-LMRVLAEIPYEKLN
10	SPARKS	7fd1a	0.203	0.223	0.884	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFVVTDNCIKCKDCVEVCPVDCFYEGP-----NFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQE

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.748 to 1qgkA SCOP code=a.118.1.1	TM-score=0.538 to 1dgnA SCOP code=a.77.1.3	TM-score=0.429 to 1durA SCOP code=d.58.1.1	TM-score=0.744 to 1hm7B SCOP code=a.128.1.4	TM-score=0.512 to 1lrzA SCOP code=a.2.7.4