Template-based Modeling Results for PTOCB_ECOLI

Submitted Primary Sequence

>Length 530
MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEECCCCHHHCCHHHHHHHCCCHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCEEEEEECCCEEEEEECHHHCCHHHHHHCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA
55433231220130012003000000000000000000011111320021011111200100010013000000110000000000000123230000000000000000001000212121222211113122011100131122000000000000000022001020130000011231010000000000010123112101200100020033012000000000110001000000000001001000112010201201120011200122121122200101120201000000000000001003331133010000000000000102110100000000000000000000000000000000000101000000000111212210000000000000000002000120214011432322111220221121310110000021011132021010001101020212220223003314010001134210000000203101310110142245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFIGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA
1	SPARKS	1iba_	0.397	0.147	2.085	threading_1	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVA-GSGVQAIFGTKSDNLKTEMDEYIRNFG-
2	PROSPECT2	1b3ua	0.088	0.945	2.083	threading_2	AAADGDDSLYPIAVLIDEEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGEYVHCLLPPLEAVESLRAISHEHSPSDLEAHFVPLVKRFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFALDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSKFTELQKAVGPEITKTDLVPAFQNLM-------------KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEGIRQLSQSLLPAIVELRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYASNLKKLVEKFGKEWAHATIIPKVLA--MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPI-------------LEKLTQDQDVDVKYFAQEALTVSLA
3	PPA-I	3bp3A	0.380	0.149	1.698	threading_3	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSEAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVA-GSGVQAIFGTKSDNLKTEDEYIRN----
4	HHPRED-l	3bp3_A	0.380	0.149	5.680	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSE-APALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV-AGSGVQAIFGTKSDNLKTE-DEYIRN---
5	PROSPECT2	1jdha	0.097	0.857	2.002	threading_5	NDEDQVVVNKAAVMVHQLSAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGLFYAITTLHNLLLHQEGAKGLQKMVALLFLAITTDCLQILAYGNQESKLIILASGGPQALVNIRTYTYEKLLWTTSRVLKVLNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ---------------VGGIEALVRTVLRAGDR----------------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE----------QGAIPRLVHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVI------RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA---------------------AEAIEAEGATAP-------LTELLHSRNEGVATYAAAVLFRM-S
6	HHPRED-g	3bp3_A	0.380	0.149	4.814	threading_6	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSE-APALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV-AGSGVQAIFGTKSDNLKTE-DEYIRN---
7	SAM-T99	1ibaA	0.397	0.147	4.387	threading_7	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSG-VQAIFGTKSDNLKTEMDEYIRNFG-
8	PROSPECT2	1ejlI	0.105	0.757	1.898	threading_8	GTVNWSVE-DIVKGINSNNLESQL--QATQAARKLLSREKQPPIDNIIR------AGLIPKFVSFLGKTDCSPI----QFESAWALTNIASGTSEQTKAVVAIPAFISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS---------NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP------NERIEMVVKKGVVPQLVKLL----------------GATELPIVTPALRAIGNIVTGTDEQTQ------KVIDAGALAVFPSLLTNPKTNIQKEATWTMSDQIQQVVNHGLVPFLVGVLKTQKEAAWAITNYTSGGTVEQIVYL------VHCGIIEPLMNLLSAKDT------KIIQVILDAISNIF--------------------------QAAEKLGETEKLSIMIEECGGLDKIEA----------------------LQRHENE-------------------SVYKASLNLIEKYFS
9	SPARKS	3ipja	0.241	0.164	1.993	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNANKYNKIANELIKIIG-EDNIISITHCATRLRVMVKDREIINDKKVEKVDEVKGVFFTSGQYQIILGTGVNKVYAEVEKMGLKTLS
10	PPA-I	1ibaA	0.397	0.147	1.533	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVA-GSGVQAIFGTKSDNLKTEMDEYIRNFG-

Predicted Tertiary Structure


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TM-score=0.841 to 1b3uA SCOP code=a.118.1.2	TM-score=0.564 to 1ibaA SCOP code=d.95.1.1	TM-score=0.779 to 1b3uA SCOP code=a.118.1.2	TM-score=0.374 to 1b4aA SCOP code=a.4.5.3	TM-score=0.510 to 2q6hA SCOP code=f.54.1.1