Template-based Modeling Results for LIVM_ECOLI

Submitted Primary Sequence

>Length 425
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
54423002000000000000001000001032010102101211000000000000001002200341132132232211223221121100000000000001011120000000000000000000000000000000000001000000000012112111100000001001000001000012131100000000000001000121130010220022012121111312321331012100111013122222100000000000000000001022011010020022122003100110210100000000000000000000210100131010110010000000001111000000000010032002102100000000000000001030012102200313322242444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
1	PROSPECT2	1jdha	0.091	0.908	1.862	threading_1	DEDQVVVNKAAVMVHQLS--------------------KKEASRHAIMRSPQMVSAIVRTMQN-------------------TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMREKLLWTTSRVLKVLSVCSSNAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALRAGDREDITEPAICALRAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTMEEIVEGCTGALHILARDLAQDKEAAEAIEAEGASRNES
2	PPA-I	1kpkA	0.111	0.913	1.066	threading_2	PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGITLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAFVAPATSGGGFNLIPIATAGNFS------MGMLVFIFVARVITTLLCFSSGAPGG----------------------IFAPMLALGTVLGTAFGMVAVELFPQYHLE---------AGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQL
3	SP3	2nq2a	0.140	0.689	1.001	threading_3	--------------------------------------------YPKILFGLTLLLVITAVIS--------LGIGRYSLSVPQIDPVQQQVIF--------------QVRLPRILTALCVGAGLALSGVVLQGIFRLVNIG----VTSGSAFGGTLAIFFGFS-LYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSI-VFWLMG-SFA------TSN----------------WEKLLFFFVPFLLCSSILLSL-----SWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGS-IGWVG---L-----IIPHLSRMLVGANHPCTMLVGATYMLLVDNVARSLSSILTALIGAPLFGVLVYKL-----------------------
4	PROSPECT2	3a6pA1	0.099	0.899	1.759	threading_4	AMDQV--NALCEQLVKAVTVMM---------------DPNSTQRCVPCGLRLVRHFGLQILEHVVKFRWNGMS---------RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKAQANCRVGVAALNTLAG------------YIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVLEDRKPLMVLFGDVAMHYILSAAQTAD-----GGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFPLLLAIIPKYLRASMTNLSCEYSRFDFDSLDPKTSFQMAGEWLKYQLSTF
5	PPA-I	2nq2A	0.151	0.656	1.062	threading_5	-------------------------------------------------------------------------------------YPKILFGLTLLLVITAVISLGIGRQQQVIFQVRLPRILTALCVGAGLALSGVVLQGIFRNVTSGSAFGGTLAIFFGFS-LYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSI--------------------VFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLD---------EKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGS-IGWVG-------LIIPHLSRMLVGANHQSCTMLVGATYMLLVDNVARSLISILTALIGAPLFGVLVYKL-----------------------
6	PROSPECT2	1xm9A	0.080	0.878	1.739	threading_6	SQDEKYQAIGAYYIQHTC--------------------FQDESAKQQVYQLGGICKLVDLLR--------------------SPNQNVQQAAAGALRNLVNKLETRRQNGIREAVSLLIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA---------SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG---ALQNLTASKGLMSSGMSQLIGLSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL
7	PROSPECT2	1ejlI	0.122	0.852	1.680	threading_7	SNNLESQLQATQAARKLLS-------------------REKQPPIDNIIRAGLIPKFVSFL-------------------GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVEVLADSCWAISYLTDGPNER------------IEMVVKKGVVPQLVKLLGATE-------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGAVFPSLLTNPKTNIQKEATWTQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSADTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAS
8	PROSPECT2	1b3ua	0.089	0.979	1.634	threading_8	LGVERTRSELLPFLTVLLALAEQLG--------TFTTLVGGPEYVHCLLPPLESLAVRDKAVESLRAISHEHSPSDLEAHFVPAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRVRRAAASKLGEFAKVLELDNVKSEIIPMFAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAVRLAIIEYMPLLAGQLGVEFFD-EKLNSLCMAWLVDHVYAIREAATSNLTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVDNSTLQSEVKPILEKLTQDQDA
9	MUSTER	1kpkA	0.148	0.889	0.872	threading_9	LRRRQLIRQLLERDKTPLAILFMAAV-------------------VGTLVGLAAVAFDKGVAWLQNQRMGALVH------TADNYPLLLTVAFLCSAVLAMFGYFLVRKYIPEIEGRVLPVKFFGGLGTLGGGMVG----REGPTVQIGGNIGRMVLDIFRLKEARHTLLATGAAAGLAAAFNAPLAGIRYTLISIKAVFIGVIMSTIMYRI----NHEVALIDVGKLSDAPLNTLWLYLILGVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGIPIATANFSMGMLVFIFV--TLLCFSSGA-PGGIFAPMLALGTVLGTAFGMVAVELFP---------QYHLEAGTFAIAG-MGALLAASIRA-PLTGIILVLEMTDNYQLILPMIITGLGATLLAQGGKPLYSAILARTLAKQEAEQL
10	SPARKS	2xwub	0.117	0.941	0.889	threading_10	DIPTDQYESLKAQLFTQITRF-----------------ASGSKIVLTRLCVALASLALSAVADMVRLFQAPVDGQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWV-QLEVPLQDCEALIQAAFAALFDSSVEAIVNAISQPDAQVNTLLKLIPLVLGLQEQLRQAVQNGD--METSHGICRIAVALGENHRALLDQVEHWQSFLATGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFRIYRVDISDTMYVYEMLGLSNLYDKLGRLLTSYSWQHTEALLYGFQSETIDVNYSDVVPGLIGLIP-----RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLP

Predicted Tertiary Structure


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TM-score=0.544 to 2q6hA SCOP code=f.54.1.1	TM-score=0.667 to 1wa5B SCOP code=a.118.1.1	TM-score=0.857 to 1kpkA SCOP code=f.20.1.1	TM-score=0.689 to 1l7vA SCOP code=f.22.1.1	TM-score=0.861 to 1kpkA SCOP code=f.20.1.1